View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20702_low_27 (Length: 251)
Name: NF20702_low_27
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20702_low_27 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 55156653 - 55156556
Alignment:
| Q |
154 |
attgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtccttagattatcctcttccc |
251 |
Q |
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| T |
55156653 |
attgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtccttagattatcctcttccc |
55156556 |
T |
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Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 54573386 - 54573289
Alignment:
| Q |
154 |
attgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtccttagattatcctcttccc |
251 |
Q |
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| T |
54573386 |
attgtatcaatgaaatacacaacaaaatattatagtaacttgattggttaaaacaagtacatacacttcaattccggtctttagattatccacttccc |
54573289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 55156801 - 55156734
Alignment:
| Q |
6 |
gagagatgaaacatattctcttatgcatagaaactaaaaataccagaatttcacacactatcaagtat |
73 |
Q |
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| T |
55156801 |
gagagatgaaacatattctcttatgcatagaaactaaaaataccagaatttcacacactatcaagtat |
55156734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 54573522 - 54573459
Alignment:
| Q |
6 |
gagagatgaaacatattctcttatgcatagaaactaaaaataccagaatttcacacactatcaa |
69 |
Q |
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| T |
54573522 |
gagagatgaaacatattctcttatgcatagacactaaaaatatcagaatttcacacactatcaa |
54573459 |
T |
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