View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20702_low_28 (Length: 250)

Name: NF20702_low_28
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20702_low_28
NF20702_low_28
[»] chr2 (2 HSPs)
chr2 (13-250)||(16946596-16946830)
chr2 (13-250)||(17017261-17017495)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 16946830 - 16946596
Alignment:
Q  13 aaaatatcaagcgagtccaattgaaaagaaagattcttctgagactcagcatttggaacaagataagtcactgaacacagagccaagagccttcttacaa 112  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16946830 aaaatatcaagcgagtccaattgaaaagaaagattcttcggagactcagcatttggaacaagataagtcactgaacacagagccaagagccttcttacaa 16946731  T
Q  113 gaaaggttgaaaagtgctaccttggtaagaaacttgcaacaggttccagtacaaattggagaaagtaataaagagaaaattaaggacaccatgcaattgg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  16946730 gaaaggttgaaaagtgctaccttggtaagaaacttgcaacaggttccagtacaaattggagaaag---taaagagaaaattaaggacaccatgcaattgg 16946634  T
Q  213 agtcgagcaccaaaaatataccgaacaaacaaacagat 250  Q
    ||| ||||||||||||||| ||||||||||||||||||    
T  16946633 agttgagcaccaaaaatatcccgaacaaacaaacagat 16946596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 17017495 - 17017261
Alignment:
Q  13 aaaatatcaagcgagtccaattgaaaagaaagattcttctgagactcagcatttggaacaagataagtcactgaacacagagccaagagccttcttacaa 112  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17017495 aaaatatcaagcgagtccaattgaaaagaaagattcttcggagactcagcatttggaacaagataagtcactgaacacagagccaagagccttcttacaa 17017396  T
Q  113 gaaaggttgaaaagtgctaccttggtaagaaacttgcaacaggttccagtacaaattggagaaagtaataaagagaaaattaaggacaccatgcaattgg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  17017395 gaaaggttgaaaagtgctaccttggtaagaaacttgcaacaggttccagtacaaattggagaaag---taaagagaaaattaaggacaccatgcaattgg 17017299  T
Q  213 agtcgagcaccaaaaatataccgaacaaacaaacagat 250  Q
    ||| ||||||||||||||| ||||||||||||||||||    
T  17017298 agttgagcaccaaaaatatcccgaacaaacaaacagat 17017261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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