View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20702_low_3 (Length: 603)
Name: NF20702_low_3
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20702_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 549; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 15 - 595
Target Start/End: Complemental strand, 43610157 - 43609577
Alignment:
| Q |
15 |
agttaggaacaggagtaaagaacccaaaatccattttctgtcatatgattcactatcttcatgttgttgatagttgtgatgatatccagatgggaggtga |
114 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43610157 |
agttaggaacaagagtaaagaacccaaaatccattttttgtcatatgattcactatcttcatgttgttgatagttgtgatgatatccagatgggaggtga |
43610058 |
T |
|
| Q |
115 |
cgtgcaattcgcaattggggtcccttgtaaaaggccagaatcgctacaccgatcatgcacaataaaacactccctatctttgaaattccagattttgtcc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43610057 |
cgtgcaattcgcaattggggtcccttgtaaaaggccagaatcgctacaccggccatgcacaataaaacactccctatctttgaaattccagattttgtcc |
43609958 |
T |
|
| Q |
215 |
ttatatttaccttctccactctacaatatataatgaacagttgagaatcttaatatatcaaatttaaaaaggacttgcttctttttgtttaaaaaattaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
43609957 |
ttatatttaccttctccactctacaatatataatgaatagttgagaatcttaatatatcaaatttaaaaaggccttgcttctttttgtttaaaaacttaa |
43609858 |
T |
|
| Q |
315 |
tgtggttttcaaaaatttacctgagcagaacagcaaagaagaatgtcgaagccggaagacaattaacaattgcaccagacagcatagcagaagtataaga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43609857 |
tgtggttttcaaaaatttacctgagcagaacagcaaagaagaatgtcgaagccggaagacaattaacaattgcaccagacagcatagcagaagtataaga |
43609758 |
T |
|
| Q |
415 |
aagagcaacaccatgcacattcagagttaaagtaagtctgaaaaagcaaccaagtaggattatagacctaattagtcctaagattctatatcaaaataat |
514 |
Q |
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| T |
43609757 |
aagagcaacaccatgcacattcagagttaaagtaagtctgaaaaagcaaccaagtaggattatagacctaattagtcctaagattctatatcaaaataat |
43609658 |
T |
|
| Q |
515 |
aaaatttggttgaaaaataacagagattaaggaataataatgtactaccccaataatgaaagcataaaaatcttgatgatg |
595 |
Q |
| |
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| T |
43609657 |
aaaatttggttgaaaaataacagagattaaggaataataatgtactaccccaataatgaaagcataaaaatcttgaagatg |
43609577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 43616779 - 43616553
Alignment:
| Q |
18 |
taggaacaggagtaaagaacccaaaatccattttctgtcatatgattcactatcttcatgttgttgatagttgtgatgatatccagatgggaggtgacgt |
117 |
Q |
| |
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|||||||| |||||||| |||||||||||||||| |||||||||||||| || |||||||| ||||| ||||||||||||||||||| | || ||||| |
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| T |
43616779 |
taggaacaagagtaaagcacccaaaatccattttttgtcatatgattcatgatattcatgttcttgattgttgtgatgatatccagatagaagatgacgc |
43616680 |
T |
|
| Q |
118 |
gcaattcgcaattggggtcccttgtaaaaggccagaatcgctacaccgatcatgcacaataaaacactccctatctttgaaattccagattttgtcctta |
217 |
Q |
| |
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|| || || |||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
43616679 |
gcgatccgtaattggggtcccttgtaaaatgccagaatcgctacaccggccatgcacaataatacacttcctatctttgaaattccagattttgtcctta |
43616580 |
T |
|
| Q |
218 |
tatttaccttctccactctacaatata |
244 |
Q |
| |
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|||||||||||||||||| ||||||| |
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|
| T |
43616579 |
aatttaccttctccactctgcaatata |
43616553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 43603745 - 43603524
Alignment:
| Q |
18 |
taggaacaggagtaaagaacccaaaatccattttctgtcatatgattcactatcttcatgttgttgatagttgtgatgatatccagatgggaggtgacgt |
117 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||||||||| |||| || || |
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| T |
43603745 |
taggaacaagaggaaagaacccaaaatccattttttctcatgtgattcactatctttatgttgttgatagttgtgatgatatccagataggagatgccgc |
43603646 |
T |
|
| Q |
118 |
gcaattcgcaattggggtcccttgtaaaaggccagaatcgctacaccgatcatgcacaataaaacactccctatctttgaaattccagattttgtcctta |
217 |
Q |
| |
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||||| || | ||| |||||||||||||| ||||||||||| ||||| ||| |||||||| |||||| |||||||||||||||||||| ||||||||| |
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| T |
43603645 |
gcaatccgtatttgaggtcccttgtaaaatgccagaatcgcaacaccagccatacacaataatacactcactatctttgaaattccagatattgtcctta |
43603546 |
T |
|
| Q |
218 |
tatttaccttctccactctaca |
239 |
Q |
| |
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|||||||||| |||| |||||| |
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| T |
43603545 |
tatttaccttttccaatctaca |
43603524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 307 - 482
Target Start/End: Complemental strand, 43616410 - 43616236
Alignment:
| Q |
307 |
aaaattaatgtggttttcaaaaatttacctgagcagaacagcaaagaagaatgtcgaagccggaagacaattaacaattgcaccagacagcatagcagaa |
406 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| ||| || ||||||||| |
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| T |
43616410 |
aaaattaatgtggttttccaaaatttacctgagcataacagcaaagaagaatgttgaagccggaagacagttaacaattgcagcagccaacatagcagac |
43616311 |
T |
|
| Q |
407 |
gtataagaaagagcaacaccatgcacattcagagttaaagtaagtctgaaaaagcaaccaagtaggattatagacc |
482 |
Q |
| |
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|| |||| |||||||| ||||| |||||||| ||||||||||| ||||||||| |||| ||||||||| ||||||| |
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|
| T |
43616310 |
gtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaa-caacaaagtaggatcatagacc |
43616236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 307 - 595
Target Start/End: Complemental strand, 43603457 - 43603168
Alignment:
| Q |
307 |
aaaattaatgtgg-ttttcaaaaatttacctgagcagaacagcaaagaagaatgtcgaagccggaagacaattaacaattgcaccagacagcatagcaga |
405 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||| ||| || | |||||| |
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| T |
43603457 |
aaaattaatgttgattttccaaaatttacctgagcagaacagcaaagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaagcaga |
43603358 |
T |
|
| Q |
406 |
agtataagaaagagcaacaccatgcacattcagagttaaagtaagtctgaaaaagcaaccaagtaggattatagacctaattagtcctaagattctatat |
505 |
Q |
| |
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||| ||| ||| |||| ||||||||||||||||| |||||||| |||| ||||||||||||| ||||||| ||| |||||||||||||||||| | | |
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| T |
43603357 |
agtgtaaacaagggcaataccatgcacattcagagctaaagtaattctg-aaaagcaaccaagaaggattacagaaaaaattagtcctaagattctttgt |
43603259 |
T |
|
| Q |
506 |
caaaataataaaatttggttgaaaaataac--agagattaaggaata---ataatgtactaccccaataatgaaagcataaaaatcttgatgatg |
595 |
Q |
| |
|
||||||| | || ||| | |||| || ||||||||| ||||| |||||||||||||| |||| |||||||||||||||||||| |||| |
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|
| T |
43603258 |
caaaatagca----tttgtttagaaatcacatagagattaaagaataatgataatgtactacccaaatagtgaaagcataaaaatcttgaagatg |
43603168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 595
Target Start/End: Complemental strand, 43614923 - 43614888
Alignment:
| Q |
560 |
taccccaataatgaaagcataaaaatcttgatgatg |
595 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| |
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|
| T |
43614923 |
taccccaataatgaaagcataaaaatcttgaagatg |
43614888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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