View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20702_low_30 (Length: 238)

Name: NF20702_low_30
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20702_low_30
NF20702_low_30
[»] chr3 (9 HSPs)
chr3 (1-213)||(32925175-32925387)
chr3 (62-211)||(1721739-1721888)
chr3 (38-211)||(1495157-1495329)
chr3 (17-207)||(25110176-25110366)
chr3 (32-205)||(20497482-20497655)
chr3 (77-211)||(34545519-34545653)
chr3 (53-211)||(41942591-41942749)
chr3 (142-181)||(28682107-28682146)
chr3 (1-138)||(33293642-33293777)
[»] chr8 (4 HSPs)
chr8 (47-211)||(41302796-41302960)
chr8 (35-211)||(32331887-32332063)
chr8 (122-205)||(27428145-27428228)
chr8 (79-181)||(43190525-43190627)
[»] chr1 (7 HSPs)
chr1 (1-211)||(12975472-12975682)
chr1 (25-211)||(7504599-7504780)
chr1 (32-207)||(33929168-33929342)
chr1 (1-206)||(37502270-37502474)
chr1 (45-211)||(10622218-10622383)
chr1 (102-181)||(43240014-43240090)
chr1 (74-110)||(44622090-44622126)
[»] chr5 (3 HSPs)
chr5 (16-194)||(8232159-8232338)
chr5 (17-187)||(3549182-3549352)
chr5 (167-211)||(27111441-27111485)
[»] chr4 (4 HSPs)
chr4 (120-211)||(15640187-15640278)
chr4 (36-198)||(43859638-43859800)
chr4 (77-181)||(9964431-9964535)
chr4 (34-133)||(10406645-10406744)
[»] chr6 (1 HSPs)
chr6 (45-196)||(3064502-3064653)
[»] chr2 (2 HSPs)
chr2 (36-181)||(36284703-36284848)
chr2 (45-145)||(38603469-38603569)
[»] chr7 (2 HSPs)
chr7 (53-151)||(29371255-29371353)
chr7 (77-140)||(18702607-18702670)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 32925387 - 32925175
Alignment:
Q  1 aaagaaagtgttgatgcttcatcgctatttgaacctcttggagttcattcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttga 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  32925387 aaagaaagtgttgatgcttcatcgctatgtgaacctcttggagttcattcggatgtatgtggttaaggtgtgtgatattttcattcatcatatttttcga 32925288  T
Q  101 gaagaaaactcttgcggagatatacttgcaaaactaggtgttaatcattcagagtctcttgtgatggtgcatcaaccattatcatgtttatcctcaccct 200  Q
    |||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32925287 gaagaaaactcttgcgcatatatacttgcaaaactaggtgttaatctttcagagtctcttgtgatggtgcatcaaccattatcatgtttatcctcaccct 32925188  T
Q  201 tactagctgatac 213  Q
    |||||||||||||    
T  32925187 tactagctgatac 32925175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 62 - 211
Target Start/End: Complemental strand, 1721888 - 1721739
Alignment:
Q  62 gttaaggtgtgtgacattttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaaaactaggtgttaatcattcagagtctcttg 161  Q
    ||||||| ||| || |||| |||||||||||||||| |||| | |||||||| || ||||||||||||||||| |||||||||||||||||| |||||||    
T  1721888 gttaaggagtgggatatttccattcatcatatttttagagagggaaactcttacgcagatatacttgcaaaacaaggtgttaatcattcagaatctcttg 1721789  T
Q  162 tgatggtgcatcaaccattatcatgtttatcctcacccttactagctgat 211  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||||||    
T  1721788 tgatggtgcatcaaccattatcatgtctatccttagccttactagctgat 1721739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 38 - 211
Target Start/End: Original strand, 1495157 - 1495329
Alignment:
Q  38 ttggagttcattcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaaaactag 137  Q
    |||||||||||| |||||||| ||| ||||| |||  | |||||||||||||||||||||  |||||||||||||||||  ||||||||| ||||| |||    
T  1495157 ttggagttcatttggatgtatttggataaggagtggaatattttcattcatcatatttttc-agaagaaaactcttgcgcggatatacttacaaaattag 1495255  T
Q  138 gtgttaatcattcagagtctcttgtgatggtgcatcaaccattatcatgtttatcctcacccttactagctgat 211  Q
     || ||||||||||||||||||||||||||| |||||||||||| ||||| ||| |||| ||||||||| ||||    
T  1495256 atgctaatcattcagagtctcttgtgatggtacatcaaccattaccatgtctattctcaaccttactagttgat 1495329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 25110176 - 25110366
Alignment:
Q  17 cttcatcgctatttgaacctcttggagttcattcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttgagaagaaaactcttgcg 116  Q
    |||||| ||||| ||||||||||| | |||||| |||||||| ||| ||||| ||| || ||||||||| |||||||||||||||||| |||||||||||    
T  25110176 cttcattgctatgtgaacctcttgaaattcattaggatgtatttggataaggagtgagatattttcatttatcatattttttgagaaggaaactcttgcg 25110275  T
Q  117 gagatatacttgcaaaactaggtgttaatcattcagagtctcttgtgatggtgcatcaaccattatcatgtttatcctcacccttactagc 207  Q
      |||||||||| |||| || ||| |||||||||||| |||||||||||| |  ||||||||||||||| | |||| ||| ||||| ||||    
T  25110276 cggatatacttgtaaaattatgtgctaatcattcagaatctcttgtgatgatatatcaaccattatcatatctatcatcaaccttattagc 25110366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 20497482 - 20497655
Alignment:
Q  32 aacctcttggagttcattcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaa 131  Q
    |||||||||||| |||||||||||||| ||| ||||| |||    |||| |||||| |||||||||  ||||| |||||||||||  || ||||||||||    
T  20497482 aacctcttggagctcattcggatgtatttggataaggagtgatttatttccattcaccatatttttcaagaaggaaactcttgcgtcgacatacttgcaa 20497581  T
Q  132 aactaggtgttaatcattcagagtctcttgtgatggtgcatcaaccattatcatgtttatcctcacccttacta 205  Q
    ||||||||| |||||||  |||||||||  ||||||| |||||||||||| ||||| |||||||| ||||||||    
T  20497582 aactaggtgctaatcatcaagagtctctcatgatggtacatcaaccattaccatgtctatcctcagccttacta 20497655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 211
Target Start/End: Complemental strand, 34545653 - 34545519
Alignment:
Q  77 attttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaaaactaggtgttaatcattcagagtctcttgtgatggtgcatcaac 176  Q
    |||| ||||||||| ||||||||||||| ||||||||||  | |||||||| ||||| |||||| |||||||| |||||||| ||||||||| |||||||    
T  34545653 atttccattcatcaaattttttgagaaggaaactcttgctcatatatacttacaaaattaggtgctaatcatttagagtctcatgtgatggtacatcaac 34545554  T
Q  177 cattatcatgtttatcctcacccttactagctgat 211  Q
    |||| |||||| |||| ||| ||||||||||||||    
T  34545553 cattctcatgtctatcttcagccttactagctgat 34545519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 211
Target Start/End: Complemental strand, 41942749 - 41942591
Alignment:
Q  53 atgtatgtggttaaggtgtgtgacattttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaaaactaggtgttaatcattcag 152  Q
    |||||| ||||||||| ||| || | || |||||||| | ||||| |||||  ||||||||||  | ||||| |||  ||||||||||||||||| |||     
T  41942749 atgtatttggttaaggagtgggatacttccattcatcgtgtttttcgagaatgaaactcttgcacatatatagttgataaactaggtgttaatcaatcaa 41942650  T
Q  153 agtctcttgtgatggtgcatcaaccattatcatgtttatcctcacccttactagctgat 211  Q
    ||||  ||||||||||||||||||||| ||||||| |||| ||| ||||||||||||||    
T  41942649 agtcatttgtgatggtgcatcaaccatcatcatgtctatcgtcagccttactagctgat 41942591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 28682107 - 28682146
Alignment:
Q  142 taatcattcagagtctcttgtgatggtgcatcaaccatta 181  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28682107 taatcattcagagtctcttgtgatggtgcatcaaccatta 28682146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 33293642 - 33293777
Alignment:
Q  1 aaagaaagtgttgatgcttcatcgctatttgaacctcttggagttcattcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttga 100  Q
    ||||||||||| ||   |||||| ||||  ||||||||||||| |||| | ||||||| ||||||||| |||  | |||||||||||||||||||||  |    
T  33293642 aaagaaagtgtcgagatttcatcactatgcgaacctcttggagctcat-cagatgtatttggttaaggagtga-atattttcattcatcatatttttaaa 33293739  T
Q  101 gaagaaaactcttgcggagatatacttgcaaaactagg 138  Q
    |||  ||||  |||||  ||||||| | ||||||||||    
T  33293740 gaatgaaacaattgcgcggatatacctacaaaactagg 33293777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 47 - 211
Target Start/End: Complemental strand, 41302960 - 41302796
Alignment:
Q  47 attcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaaaactaggtgttaatc 146  Q
    |||| ||| ||| ||||||||| ||| || |||| |||||||||||||||| |||| | ||||||||||| | ||||||||||||||| ||||| |||||    
T  41302960 attcagatatatttggttaaggagtgggatatttccattcatcatatttttagagagggaaactcttgcgcatatatacttgcaaaacaaggtgctaatc 41302861  T
Q  147 attcagagtctcttgtgatggtgcatcaaccattatcatgtttatcctcacccttactagctgat 211  Q
    | ||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||    
T  41302860 aatcagagtctcttgtgatggtgcatcaaccattatcatgtctatccttagccttactagctgat 41302796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 35 - 211
Target Start/End: Original strand, 32331887 - 32332063
Alignment:
Q  35 ctcttggagttcattcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaaaac 134  Q
    ||||||||| | |||| ||||||| ||||||||| ||| || |||| |||||||||||||||| |||| | ||||||||||| |||||||||||||||||    
T  32331887 ctcttggagcttattcagatgtatttggttaaggagtgagatatttccattcatcatatttttagagagggaaactcttgcgcagatatacttgcaaaac 32331986  T
Q  135 taggtgttaatcattcagagtctcttgtgatggtgcatcaaccattatcatgtttatcctcacccttactagctgat 211  Q
     ||||  |||||| ||||| ||||||||||||||||||||||||||||||||| |||| | | | ||||||||||||    
T  32331987 aaggtactaatcaatcagaatctcttgtgatggtgcatcaaccattatcatgtctatctttagctttactagctgat 32332063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 27428228 - 27428145
Alignment:
Q  122 atacttgcaaaactaggtgttaatcattcagagtctcttgtgatggtgcatcaaccattatcatgtttatcctcacccttacta 205  Q
    |||||||||||||||||||  |||||||||| | ||||||||||||  ||||||| |||| ||||| |||||| | ||||||||    
T  27428228 atacttgcaaaactaggtgccaatcattcagggcctcttgtgatggctcatcaactattaccatgtctatccttagccttacta 27428145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 43190525 - 43190627
Alignment:
Q  79 tttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaaaactaggtgttaatcattcagagtctcttgtgatggtgcatcaacca 178  Q
    |||||||||||| |||||||| |||| |||||  |||| | |||| ||||| |||  |  || |||||||||||| ||||||| |||  |||||||||||    
T  43190525 tttcattcatcacattttttgggaaggaaactactgcgcaaatatgcttgctaaatgacatgctaatcattcagattctcttgcgataatgcatcaacca 43190624  T
Q  179 tta 181  Q
    |||    
T  43190625 tta 43190627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 12975682 - 12975472
Alignment:
Q  1 aaagaaagtgttgatgcttcatcgctatttgaacctcttggagttcattcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttga 100  Q
    ||||||||| |||| |||||||| ||||   || || |||||| | |||| ||||||| ||||||||| ||| || |||| |||||||||||||||| ||    
T  12975682 aaagaaagtattgaggcttcatcactatgcaaatcttttggagcttattcagatgtatttggttaaggagtgggatatttccattcatcatatttttaga 12975583  T
Q  101 gaagaaaactcttgcggagatatacttgcaaaactaggtgttaatcattcagagtctcttgtgatggtgcatcaaccattatcatgtttatcctcaccct 200  Q
    |  | |||||||||||  |||||| ||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||| ||  |||||| | |||    
T  12975582 gtgggaaactcttgcgcggatatatttgcaaaactaggtgctaagcattcagagtctcttgtgatgatgcatcaaccattatcttgactatccttagcct 12975483  T
Q  201 tactagctgat 211  Q
    |||||||||||    
T  12975482 tactagctgat 12975472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 7504599 - 7504780
Alignment:
Q  25 ctatttgaacctcttggagttcattcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttgagaagaaaactcttgcggagatata 124  Q
    |||| |||||||||||||||||||| |||||||| ||||||| |  || || | ||||||     |||||||| |||||| ||||||||| |  ||||||    
T  7504599 ctatgtgaacctcttggagttcatttggatgtatttggttaaagattgggataatttcat-----atatttttcgagaaggaaactcttgtgcggatata 7504693  T
Q  125 cttgcaaaactaggtgttaatcattcagagtctcttgtgatggtgcatcaaccattatcatgtttatcctcacccttactagctgat 211  Q
    ||||| ||||||||||||||| ||||||| |||||||||||| |||||||||||||| ||||| |||| | | ||||||||| ||||    
T  7504694 cttgctaaactaggtgttaattattcagaatctcttgtgatgatgcatcaaccattaccatgtctatcgttagccttactagatgat 7504780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 207
Target Start/End: Original strand, 33929168 - 33929342
Alignment:
Q  32 aacctcttggagttcattcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaa 131  Q
    |||||||||||| | |||| ||||||| | ||||||| ||| || |||| |||||||||||||||| |||  ||||| |||||||  |||||| ||||||    
T  33929168 aacctcttggagcttattcagatgtatttagttaaggagtgggatatttccattcatcatatttttagaggggaaaa-tcttgcgcggatatatttgcaa 33929266  T
Q  132 aactaggtgttaatcattcagagtctcttgtgatggtgcatcaaccattatcatgtttatcctcacccttactagc 207  Q
    |||||| || ||| |||||| |||||||||||||| ||  |||||||||||||||| |||||| | ||||||||||    
T  33929267 aactagatgctaagcattcaaagtctcttgtgatgatgtgtcaaccattatcatgtctatccttagccttactagc 33929342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 37502270 - 37502474
Alignment:
Q  1 aaagaaagtgttgatgcttcatcgctatttgaacctcttggagttcattcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttga 100  Q
    |||| |||||| || |||||||| |||| ||||||||||| |  | |||||||||||| ||| ||||  |||  | ||||||||||||||||||||| ||    
T  37502270 aaaggaagtgtcgaggcttcatcactatgtgaacctcttgaaacttattcggatgtatttggataagaagtgaaatattttcattcatcatatttttcga 37502369  T
Q  101 gaagaaaactcttgcggagatatacttgcaaaactaggtgttaatcattcagagtctcttgtgatggtgcatcaaccattatcatgtttatcctcaccct 200  Q
    |||||||||  ||||  |||||||||||||||| ||  || |||||||||||| |||||| ||||||| |||||||||||| ||  |||||| | | |||    
T  37502370 gaagaaaacctttgc-tagatatacttgcaaaagtatatgctaatcattcagaatctcttatgatggtacatcaaccattaccacatttatctttaacct 37502468  T
Q  201 tactag 206  Q
    ||||||    
T  37502469 tactag 37502474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 211
Target Start/End: Original strand, 10622218 - 10622383
Alignment:
Q  45 tcattcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaaaactaggtgttaa 144  Q
    ||||| |||||||  | ||||||| ||| || |||||||| |||||||||| | || ||||||||| ||||   ||||||||||  ||| | | || | |    
T  10622218 tcatttggatgtagttagttaaggagtgagatattttcat-catcatatttatcgaaaagaaaacttttgcatggatatacttgttaaagtggatgctga 10622316  T
Q  145 tcattcagagtctcttgtgatggtgcatcaaccattatcatgtttatcctcacccttactagctgat 211  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||| | |||||| ||||||||| ||||    
T  10622317 tcattcagagtcttttgtgattgtgcatcaaccattaccatgtgtctcctcaaccttactagttgat 10622383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 43240090 - 43240014
Alignment:
Q  102 aagaaaactcttgcggagatatacttgcaaaactaggtgttaatcattcagagtctcttgtgatggtgcatcaaccatta 181  Q
    |||||||||||||||   ||||||||| |||| || |||||||||||| |||||||||  ||||||| ||||||||||||    
T  43240090 aagaaaactcttgcgttaatatacttgtaaaa-taagtgttaatcatttagagtctct--tgatggtacatcaaccatta 43240014  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 44622090 - 44622126
Alignment:
Q  74 gacattttcattcatcatattttttgagaagaaaact 110  Q
    |||||||||||||||| |||||||||||||| |||||    
T  44622090 gacattttcattcatcgtattttttgagaaggaaact 44622126  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 8232159 - 8232338
Alignment:
Q  16 gcttcatcgctatttgaacctcttggagttcattcggatgtatgtggttaaggtgtgtgacattttcattcatcat-attttttgagaagaaaactcttg 114  Q
    |||||||| ||||  ||||||||||||| |||||| ||||||| ||||||||| |||  | ||||||||||||| | |||||| |||||| |||||||||    
T  8232159 gcttcatcactatgcgaacctcttggagctcattcagatgtatttggttaaggagtgaaatattttcattcatcgttatttttagagaaggaaactcttg 8232258  T
Q  115 cggagatatacttgcaaaactaggtgttaatcattcagagtctcttgtgatggtgcatcaaccattatcatgtttatcct 194  Q
    ||  ||||||||||||||| |||||| |||||| ||||||| |||||| | ||||||||||||| |||||||| ||||||    
T  8232259 cgtggatatacttgcaaaattaggtgctaatcagtcagagtttcttgtaaaggtgcatcaaccactatcatgtctatcct 8232338  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 3549182 - 3549352
Alignment:
Q  17 cttcatcgctatttgaacctcttggagttcattcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttgagaagaaaactcttgcg 116  Q
    ||||||| ||||  ||||||||| ||   |||||||| |||| ||| ||||  ||| || |||| ||||||||||||||||| ||||| |||||||||||    
T  3549182 cttcatcactatgcgaacctcttagaacacattcggacgtatttggataagaagtgggatatttccattcatcatatttttttagaaggaaactcttgcg 3549281  T
Q  117 gagatatacttgcaaaactaggtgttaatcattcagagtctcttgtgatggtgcatcaaccattatcatgt 187  Q
     | || |||||  ||||||||||| |||| |||||||||||||||||||||| |||||| |||||||||||    
T  3549282 catatctacttttaaaactaggtgctaattattcagagtctcttgtgatggtacatcaatcattatcatgt 3549352  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 27111441 - 27111485
Alignment:
Q  167 gtgcatcaaccattatcatgtttatcctcacccttactagctgat 211  Q
    ||||||||||||||||||||||||||||||  |||| ||||||||    
T  27111441 gtgcatcaaccattatcatgtttatcctcagtcttattagctgat 27111485  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 15640278 - 15640187
Alignment:
Q  120 atatacttgcaaaactaggtgttaatcattcagagtctcttgtgatggtgcatcaaccattatcatgtttatcctcacccttactagctgat 211  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| | ||||||||||||    
T  15640278 atatacttgcaaaagtaggtgttaatcattcagagtctcttgtgatgatacatcaaccattatcatgtctatcctcagctttactagctgat 15640187  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 43859800 - 43859638
Alignment:
Q  36 tcttggagttcattcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaaaact 135  Q
    |||||||| |||||| | ||||| ||||||| | ||| || |||| |||||||| ||||||| |||||| ||||||| ||| | ||||| |||| |||||    
T  43859800 tcttggagctcattcaggtgtatttggttaaagagtgagatatttccattcatcgtatttttcgagaaggaaactctagcgcaaatatatttgctaaact 43859701  T
Q  136 aggtgttaatcattcagagtctcttgtgatggtgcatcaaccattatcatgtttatcctcacc 198  Q
    | || ||| | ||| |||||||||||||||||||||||||||||||  |||| |||| |||||    
T  43859700 atgtattactaatttagagtctcttgtgatggtgcatcaaccattactatgtctatcatcacc 43859638  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 9964431 - 9964535
Alignment:
Q  77 attttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaaaactaggtgttaatcattcagagtctcttgtgatggtgcatcaac 176  Q
    |||| ||||||||||||||||||||||| || |||||||    ||||| ||  |||| |||||| |||||||| |||||||||||||||||| |||||||    
T  9964431 atttccattcatcatattttttgagaaggaagctcttgcatgaatatatttaaaaaattaggtgataatcatttagagtctcttgtgatggtacatcaac 9964530  T
Q  177 catta 181  Q
    |||||    
T  9964531 catta 9964535  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 133
Target Start/End: Original strand, 10406645 - 10406744
Alignment:
Q  34 cctcttggagttcattcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaaaa 133  Q
    |||||||||  ||||||  |||||| ||| ||||| |||||  |||| |||| ||||||||||| |||||||||||||||||  | ||||||||||||||    
T  10406645 cctcttggaactcattcatatgtatttggataaggagtgtggtatttccatttatcatatttttcgagaagaaaactcttgcatatatatacttgcaaaa 10406744  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 45 - 196
Target Start/End: Complemental strand, 3064653 - 3064502
Alignment:
Q  45 tcattcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaaaactaggtgttaa 144  Q
    |||||| ||||||| ||||||| | |||  | |||| | || |||||||||| ||||||| |||||| |||| | |||||| ||||||| ||||||||||    
T  3064653 tcattcagatgtatttggttaaagagtggaatatttcctttaatcatattttatgagaaggaaactcgtgcgcatatatacctgcaaaattaggtgttaa 3064554  T
Q  145 tcattcagagtctcttgtgatggtgcatcaaccattatcatgtttatcctca 196  Q
    ||||||| ||||| || | |||||||||||||||||||||||||| ||||||    
T  3064553 tcattcaaagtctttttttatggtgcatcaaccattatcatgtttgtcctca 3064502  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 36284703 - 36284848
Alignment:
Q  36 tcttggagttcattcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaaaact 135  Q
    |||||||| | ||| | |||||| || |||||| ||| || |||| |||||||||||||||| | ||||||||||||||||   |||||||||| ||| |    
T  36284703 tcttggagcttatttgaatgtatttgattaaggagtgagatatttccattcatcatatttttcgcgaagaaaactcttgcgcgcatatacttgctaaatt 36284802  T
Q  136 aggtgttaatcattcagagtctcttgtgatggtgcatcaaccatta 181  Q
    ||| | |||||||| | | | |||||||||| ||||  ||||||||    
T  36284803 aggggataatcatttaaaatatcttgtgatgatgcactaaccatta 36284848  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 38603469 - 38603569
Alignment:
Q  45 tcattcggatgtatgtggttaaggtgtgtgacattttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaaaactaggtgttaa 144  Q
    ||||| |||| ||| ||||||||| ||| || ||||| ||| |||||||||||||| ||  |||||||| ||  ||||||||||  |||||| |||||||    
T  38603469 tcatttggatatatttggttaaggagtgagatatttttatttatcatattttttgaaaaagaaactcttacgcggatatacttgttaaactaagtgttaa 38603568  T
Q  145 t 145  Q
    |    
T  38603569 t 38603569  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 29371255 - 29371353
Alignment:
Q  53 atgtatgtggttaaggtgtgtgacattttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaaaactaggtgttaatcattca 151  Q
    |||||| | ||||||| ||| || ||||||||||||||||||||| || || |||| | || || |||||||  | ||||| |||||||||||||||||    
T  29371255 atgtattttgttaaggagtgagatattttcattcatcatatttttcgaaaataaaatttttacgcagatataaatacaaaattaggtgttaatcattca 29371353  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 18702670 - 18702607
Alignment:
Q  77 attttcattcatcatattttttgagaagaaaactcttgcggagatatacttgcaaaactaggtg 140  Q
    |||||||||||  || ||||| |||||| ||||||||||   ||||||||||||||||||||||    
T  18702670 attttcattcacaatgtttttcgagaagtaaactcttgccccgatatacttgcaaaactaggtg 18702607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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