View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20702_low_31 (Length: 234)

Name: NF20702_low_31
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20702_low_31
NF20702_low_31
[»] chr7 (2 HSPs)
chr7 (74-234)||(42293304-42293464)
chr7 (15-53)||(42293466-42293504)


Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 74 - 234
Target Start/End: Complemental strand, 42293464 - 42293304
Alignment:
Q  74 aataattaacttagataacaccttaacccaggcatgccgttgatatcattgttcctaggacaatttatttatttaacttccaaagtagtagtatattaag 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42293464 aataattaacttagataacaccttaacccaggcatgccgttgatatcattgttcctaggacaatttatttatttaacttccaaagtagtagtatatcaag 42293365  T
Q  174 ctttacaagcggggttagaggaaaggcttgttagccaaacagagtcactaacaacaggttc 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42293364 ctttacaagcggggttagaggaaaggcttgttagccaaacagagtcactaacaacaggttc 42293304  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 42293504 - 42293466
Alignment:
Q  15 gtaactgcaccgaaagatatttataatattatttgttga 53  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42293504 gtaactgcaccgaaagatatttataatattatttgttga 42293466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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