View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20702_low_32 (Length: 226)

Name: NF20702_low_32
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20702_low_32
NF20702_low_32
[»] chr2 (3 HSPs)
chr2 (18-226)||(37335567-37335775)
chr2 (18-65)||(3989091-3989138)
chr2 (18-50)||(21393691-21393723)
[»] chr3 (4 HSPs)
chr3 (18-65)||(41883226-41883273)
chr3 (19-50)||(41224263-41224294)
chr3 (18-50)||(8362048-8362080)
chr3 (18-50)||(9797032-9797064)
[»] chr8 (3 HSPs)
chr8 (18-61)||(3890619-3890662)
chr8 (26-62)||(3817941-3817977)
chr8 (18-50)||(31347785-31347817)
[»] chr5 (3 HSPs)
chr5 (18-65)||(31640943-31640990)
chr5 (18-50)||(17545688-17545720)
chr5 (18-50)||(22913057-22913089)
[»] chr4 (5 HSPs)
chr4 (18-65)||(9088885-9088932)
chr4 (18-65)||(17655445-17655492)
chr4 (18-52)||(25063397-25063431)
chr4 (18-52)||(33530691-33530725)
chr4 (18-50)||(24392697-24392729)
[»] chr7 (2 HSPs)
chr7 (18-65)||(30848584-30848631)
chr7 (18-50)||(15238412-15238444)
[»] chr1 (1 HSPs)
chr1 (18-65)||(10167415-10167462)
[»] chr6 (1 HSPs)
chr6 (18-50)||(11548591-11548623)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 37335775 - 37335567
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttgatatatatcattgctcctaacctattaccaacactcacttatcatattaccaaaccagcaatttatgc 117  Q
    |||||| ||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37335775 tattctgccatgtcattcttgaatctttcttaatatatagcattgctcctaacctattaccaacactcacttatcatattaccaaaccagcaatttatgc 37335676  T
Q  118 ttcatcgagcaaaaacataaaatcttctcccaataacattgtaatacatgctatttgtcttgaatcttaaccaatttcaagaaagtcattttaccgattc 217  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37335675 ttcatcgagtaaaaacagaaaatcttctcccaataacattgtaatacatgctatttgtcttgaatcttaaccaatttcaagaaagtcattttaccgattc 37335576  T
Q  218 ggtgatatt 226  Q
    |||||||||    
T  37335575 ggtgatatt 37335567  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 3989138 - 3989091
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttgatatatatcattgctc 65  Q
    |||||| ||||||||||||| || ||||||||||||||| ||||||||    
T  3989138 tattctgccatgtcattcttaaaattttcttgatatatagcattgctc 3989091  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 21393691 - 21393723
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttga 50  Q
    |||||||||||||||||||| ||||||||||||    
T  21393691 tattctaccatgtcattcttaaatttttcttga 21393723  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 41883226 - 41883273
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttgatatatatcattgctc 65  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  41883226 tattctgccatgtcattcttgaatttttcttgatatatagcattgctc 41883273  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 41224294 - 41224263
Alignment:
Q  19 attctaccatgtcattcttgaatttttcttga 50  Q
    ||||||||||||||||||||||||||||||||    
T  41224294 attctaccatgtcattcttgaatttttcttga 41224263  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 8362048 - 8362080
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttga 50  Q
    |||||| ||||||||||||||||||||||||||    
T  8362048 tattctgccatgtcattcttgaatttttcttga 8362080  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 9797032 - 9797064
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttga 50  Q
    |||||| ||||||||||||||||||||||||||    
T  9797032 tattctgccatgtcattcttgaatttttcttga 9797064  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 3890619 - 3890662
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttgatatatatcatt 61  Q
    |||||| |||||||||||||||||||||||||||||||| ||||    
T  3890619 tattctgccatgtcattcttgaatttttcttgatatatagcatt 3890662  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 3817941 - 3817977
Alignment:
Q  26 catgtcattcttgaatttttcttgatatatatcattg 62  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  3817941 catgtaattcttgaatttttcttgatatatagcattg 3817977  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 31347785 - 31347817
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttga 50  Q
    |||||| ||||||||||||||||||||||||||    
T  31347785 tattctgccatgtcattcttgaatttttcttga 31347817  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 31640943 - 31640990
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttgatatatatcattgctc 65  Q
    |||||| ||||||||||||||||| |||||||||||||| ||||||||    
T  31640943 tattctgccatgtcattcttgaatctttcttgatatatagcattgctc 31640990  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 17545688 - 17545720
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttga 50  Q
    |||||| ||||||||||||||||||||||||||    
T  17545688 tattctgccatgtcattcttgaatttttcttga 17545720  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 22913057 - 22913089
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttga 50  Q
    |||||| ||||||||||||||||||||||||||    
T  22913057 tattctgccatgtcattcttgaatttttcttga 22913089  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 9088932 - 9088885
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttgatatatatcattgctc 65  Q
    |||||| |||||||||||||||| ||||||||||||||| ||||||||    
T  9088932 tattctgccatgtcattcttgaaattttcttgatatatagcattgctc 9088885  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 17655492 - 17655445
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttgatatatatcattgctc 65  Q
    |||||| |||||||||||||||| ||||||| ||||||| ||||||||    
T  17655492 tattctgccatgtcattcttgaaattttcttaatatataacattgctc 17655445  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 25063431 - 25063397
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttgata 52  Q
    |||||||||||||||||||||||| ||||||||||    
T  25063431 tattctaccatgtcattcttgaatctttcttgata 25063397  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 33530691 - 33530725
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttgata 52  Q
    |||||| ||||||||||||||||||||||||||||    
T  33530691 tattctgccatgtcattcttgaatttttcttgata 33530725  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 24392729 - 24392697
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttga 50  Q
    |||||| ||||||||||||||||||||||||||    
T  24392729 tattctgccatgtcattcttgaatttttcttga 24392697  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 30848631 - 30848584
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttgatatatatcattgctc 65  Q
    |||||| ||||||||||||| || ||||||||||||||| ||||||||    
T  30848631 tattctgccatgtcattcttaaaattttcttgatatatagcattgctc 30848584  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 15238444 - 15238412
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttga 50  Q
    |||||| ||||||||||||||||||||||||||    
T  15238444 tattctgccatgtcattcttgaatttttcttga 15238412  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 10167462 - 10167415
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttgatatatatcattgctc 65  Q
    ||||||| |||||||||||| ||| |||||||||||||| ||||||||    
T  10167462 tattctatcatgtcattcttaaatctttcttgatatataacattgctc 10167415  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 11548591 - 11548623
Alignment:
Q  18 tattctaccatgtcattcttgaatttttcttga 50  Q
    |||||| ||||||||||||||||||||||||||    
T  11548591 tattctgccatgtcattcttgaatttttcttga 11548623  T

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