View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20702_low_4 (Length: 593)
Name: NF20702_low_4
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20702_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 213 - 574
Target Start/End: Original strand, 21832797 - 21833158
Alignment:
| Q |
213 |
caaacccgtaacaataaaaacataacctaactccaaaccctaatatttttgtgtcaccgccagcaccatttttgcaccaacgttaccgtctttttgtgtt |
312 |
Q |
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| T |
21832797 |
caaacccgtaacaataaaaacataacctaactccaaaccctaatatttttgtgtcaccgccagcaccatttttgcactaacgttaccgtctttttgtgtt |
21832896 |
T |
|
| Q |
313 |
cacagtttctacagttttcacgacttcgcaaaaccatggttacaacaacacattcatattcatacttacctgatgactgttggaaatgcatcttcaaatt |
412 |
Q |
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||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21832897 |
cacggtttctgcagttttcacgacttcgcaaaaccatggttacaacaacacattcaaattcatacttacctgatgactgttggaaatgcatcttcaaatt |
21832996 |
T |
|
| Q |
413 |
catcatcgacgacgacgacaacaatcgtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactg |
512 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21832997 |
catcatcgacgaggacgacaacaatcgtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactg |
21833096 |
T |
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| Q |
513 |
actgtcctcaatccaacacgccctctcatccgtcccctcttcaaaaggttcaccaatcttac |
574 |
Q |
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| T |
21833097 |
actgtcctcaatccaacacgccctctcatccgtcccctcttcaaaagattcaccaaccttac |
21833158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 21832402 - 21832497
Alignment:
| Q |
112 |
cgtaaatataacctaactccaaggatcattcagtaacgcaacagtacaaccataacctaactacaaaccctaacatttgtttcaccatccgttacc |
207 |
Q |
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| T |
21832402 |
cgtaaatataacctaactccaaggatcattcagtaacgcaacagtacaaccataacctaactacaaaccctaacatttgtttcaccatctgttacc |
21832497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 21832293 - 21832347
Alignment:
| Q |
1 |
gaaataagtgttgccgataatccatttcctaattgaatgaagttgaattttatgt |
55 |
Q |
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| T |
21832293 |
gaaataagtgttgccgataatccatttcccaattgaatgaagttgaattttatgt |
21832347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 565
Target Start/End: Complemental strand, 6417399 - 6417276
Alignment:
| Q |
442 |
gctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactgactgtcctcaatccaacacgccctctcat |
541 |
Q |
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| T |
6417399 |
gctacttgaattttctctcccttgtctccaagcaactcctctccatcaccaaccgaattcgattcacactgactatcctcaatccaacacgccctttcct |
6417300 |
T |
|
| Q |
542 |
ccgtcccctcttcaaaaggttcac |
565 |
Q |
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||| |||||| ||||| ||||| |
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| T |
6417299 |
ttgtcgcctctttaaaagattcac |
6417276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 413
Target Start/End: Complemental strand, 6433220 - 6433175
Alignment:
| Q |
368 |
atattcatacttacctgatgactgttggaaatgcatcttcaaattc |
413 |
Q |
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||||||| | |||||||||||||||||| |||||||||||| |||| |
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| T |
6433220 |
atattcaaatttacctgatgactgttgggaatgcatcttcagattc |
6433175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 489
Target Start/End: Original strand, 45055773 - 45055858
Alignment:
| Q |
404 |
cttcaaattcatcatcgacgacgacgacaacaatcgtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatca |
489 |
Q |
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| T |
45055773 |
cttcaaattcctcatcgatgactacaacaacaatagtccctacttagagtctctctccctcgtctccaaacacttcctctccatca |
45055858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 571
Target Start/End: Complemental strand, 28533138 - 28532997
Alignment:
| Q |
430 |
acaacaatcgtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactgactgtcctcaatccaac |
529 |
Q |
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||||||| |||||| ||||| | |||||||| | || ||||||| ||||||||||||| || | || ||||| ||||| ||| || |||||||||| |
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| T |
28533138 |
acaacaaccgtcgcaacttgagttctctctccaccgtatccaaacggttcctctccatcaccggacgcctccgattctcactcactctcgtcaatccaac |
28533039 |
T |
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| Q |
530 |
acgccctctcatccgtcccctcttcaaaaggttcaccaatct |
571 |
Q |
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| T |
28533038 |
accccctttcctacttagcctcttcaaaaggttcacccatct |
28532997 |
T |
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