View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20702_low_5 (Length: 576)
Name: NF20702_low_5
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20702_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 314 - 560
Target Start/End: Original strand, 30018741 - 30018987
Alignment:
| Q |
314 |
cacaaatgggctctaattcttgactaactttatctctaataacaggagctgctaaagtttctgaaaaattggctaaagattcaatcaaagcattggagag |
413 |
Q |
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| T |
30018741 |
cacaaatgggctctaattcttgactaactttatctctaataacaggagctgctaaagtttctgaaaaattggctaaagattcaatcaaagcattggagag |
30018840 |
T |
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| Q |
414 |
aagtgaatcagctagaggaggaagcaacaaaaatgaagttgattcttcatctcttgtgacactcacattagatgaatatcatgagctaagtaagagaact |
513 |
Q |
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| T |
30018841 |
aagtgaatcagctagaggaggaagcaacaaaaatgaagttgattcttcatctcttgtgacactcacattagatgaatatcatgagctaagtaagagaact |
30018940 |
T |
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| Q |
514 |
caaaaggctgaggaacaagctaatctaagaattgcagctgcaaattc |
560 |
Q |
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| T |
30018941 |
caaaaggctgaggaacaagctaatctaagaattgcagctgcaaattc |
30018987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 30018443 - 30018677
Alignment:
| Q |
12 |
agagattatggctgagttacctaagaaacttcaagcagcagcacaagaagctgatgaagctaaatcactagctcaaactgctaaagctcaacttcttgaa |
111 |
Q |
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| T |
30018443 |
agagattatggctgagttacctaagaaacttcaagcagcagcacaagaagctgatgaagctaaatcactagctcaaactgctaaagctcaacttcttgaa |
30018542 |
T |
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| Q |
112 |
gcacaagaagaagctgaaaaagccaaagcaaacttagctacattggaaagtagattacaagcaacacaaaatgaaataggtattactgaaatatctcacc |
211 |
Q |
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| T |
30018543 |
gcacaagaagaagctgaaaaagccaaagcaaacttagctacattggaaagtagattacaagcaacacaaaatgaaataggtattactgaaatatctcacc |
30018642 |
T |
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| Q |
212 |
tattgaaaactggtaaaaaagttattttgatattc |
246 |
Q |
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| T |
30018643 |
tattgaaaactggtaaaaaagtgattttgatattc |
30018677 |
T |
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