View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20702_low_9 (Length: 412)
Name: NF20702_low_9
Description: NF20702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20702_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 378
Target Start/End: Complemental strand, 41083366 - 41083003
Alignment:
| Q |
7 |
gtgagatgaagtctacggtcacttgtaagcatttgttcaggctatatcatttttcagcgtaagactcttacctctcacatctaagactgaacatctaaaa |
106 |
Q |
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| T |
41083366 |
gtgagatgaagactacggtcacttgtaagcatttgttcaggctatatcatttttcagcgtaagactcttacctctcacatctaagactgaacatctaaaa |
41083267 |
T |
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| Q |
107 |
catgactcgagtggtccgatagtggaaagctagtagccgatggtcaaacaaattttggatagactctaataacatgtttgaatttgtgattgagtttaac |
206 |
Q |
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| T |
41083266 |
cgtgacttgagtggtccgatagtggaaagctagtagccgatggtcaaacaaattttggataggctctaataacatgtttgaatttgtgattgagtttaac |
41083167 |
T |
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| Q |
207 |
acaaccttacaacaccagcttgtaagatgaagactacccaacctattaacatttgttcagaccatatcactttcagtatgagactcttaacatacatcga |
306 |
Q |
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| T |
41083166 |
a--------caacaccagcttgtaagataaagactacccaacctataaacatttgttcagaccatatcactatcagtgtgagactcttaacatacgtaga |
41083075 |
T |
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| Q |
307 |
gtagttttcaatctttctagtttcatacgttttttagtttctgcacaaaaataatagacgattaagcgtttt |
378 |
Q |
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| T |
41083074 |
gtagttttcaatctttctagtttcattcgctttttagtttgtgcacaaaaataatagacgattaagcgtttt |
41083003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 45089521 - 45089622
Alignment:
| Q |
117 |
gtggtccgatagtggaaagctagtagccgatggtcaaacaaattttggatagactctaataacatgtttgaatttgtgattgagtttaacacaaccttac |
216 |
Q |
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| T |
45089521 |
gtggtccgatagggaaaagctgatagccggtggtcaaacaaatttttgacagactctaataacaccttagaatttgtgagtaagttttacacaatcttac |
45089620 |
T |
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| Q |
217 |
aa |
218 |
Q |
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| T |
45089621 |
aa |
45089622 |
T |
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