View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20703_low_3 (Length: 216)
Name: NF20703_low_3
Description: NF20703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20703_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 3e-96; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 31787285 - 31787081
Alignment:
| Q |
1 |
aattcctggtactgatcaaaatcaatatacccatgggacagggacaggaacagga------tatggaacaactggttatggtgctagtggtgtaggtcat |
94 |
Q |
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| T |
31787285 |
aattcctggtactgatcaaaatcaatatactcatgggacagggacaggaacaggaacaggatatggaacaactggttatggtgctagtggtgtaggtcat |
31787186 |
T |
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| Q |
95 |
caacaacatggagagaaaggggttatggacaagattaaggagaagattcctggtactgaacaaaatacttatgggacaggcactggaacaggtcatggaa |
194 |
Q |
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| T |
31787185 |
caacaacatggagagaaaggggttatggacaagattaaggagaagattcctggtactgaacaaaatacttatgggacaggcactggaacaggtcatggaa |
31787086 |
T |
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| Q |
195 |
caact |
199 |
Q |
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||||| |
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| T |
31787085 |
caact |
31787081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 31787312 - 31787264
Alignment:
| Q |
112 |
aggggttatggacaagattaaggagaagattcctggtactgaacaaaat |
160 |
Q |
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| T |
31787312 |
aggggttatggacaagattaaggagaaaattcctggtactgatcaaaat |
31787264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 31787435 - 31787387
Alignment:
| Q |
112 |
aggggttatggacaagattaaggagaagattcctggtactgaacaaaat |
160 |
Q |
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| T |
31787435 |
aggggtaatggacaagattaaggagaaaattcctggtactgatcaaaat |
31787387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 70
Target Start/End: Complemental strand, 31787374 - 31787345
Alignment:
| Q |
41 |
gggacaggaacaggatatggaacaactggt |
70 |
Q |
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| T |
31787374 |
gggacaggaacaggatatggaacaactggt |
31787345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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