View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20704_high_6 (Length: 440)
Name: NF20704_high_6
Description: NF20704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20704_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 377
Target Start/End: Original strand, 42924065 - 42924445
Alignment:
| Q |
14 |
atatcatatgtgtttagtttccggtcttctttgctggttagtcttatgtacgtattatgtcgttgttgttgtttgggttttcttgattgaatatgatgtt |
113 |
Q |
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| T |
42924065 |
atatcatatgtgtttagtttccagtcttctttgctggttagtcttatgtacgtattatgtcgttgttgttgtttgggttttcttgattgaatatgatgtt |
42924164 |
T |
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| Q |
114 |
acctttttcagttttagttattttggtgttagggactttgaagctttcatgcttgtgtggtccagagtgttgaatttgcaataatcttgtactttgcccc |
213 |
Q |
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| T |
42924165 |
acctttttcagttttagttattttggtgttagggactttgaagctttcatgcttgtgtggtccagagtgttgaatttgcaataatcttgtactttgcccc |
42924264 |
T |
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| Q |
214 |
gacagtggatagttgtctacacttgtattatgaagttcaatttcatgg---agagnnnnnnncgaaacaataaatttgttgggaaatataaccgtatcgt |
310 |
Q |
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| T |
42924265 |
gacagtggatagttgtctacacttgtattatgaagttcaatttcatggaaaaaaaaaaaaaacgaaacaataaatttgttgggaaatataaccgtatcgt |
42924364 |
T |
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| Q |
311 |
ttacg--------------aacttatgaaagaaacacaagtcagactaataaaaaatgaaacaataaattttatgaagttt |
377 |
Q |
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| T |
42924365 |
ttacgttgggaggaatttaaacttatgaaagaaacacaagtcagactaataaaaaatgaaacaataaattttatgaagttt |
42924445 |
T |
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