View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20704_high_9 (Length: 298)
Name: NF20704_high_9
Description: NF20704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20704_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 47183746 - 47184013
Alignment:
| Q |
19 |
caagtgacgtaatttttgaggcgaagatcacaccagccgtcatagtatcttgcattatggctgctttcggtggtcttatgtttgggtatgatattggtat |
118 |
Q |
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| T |
47183746 |
caagtgatgtaatttttgaggcgaagatcacaccagccgtcatagtatcttgcattatggctgctttcggtggtcttatgtttggttatgatattggtat |
47183845 |
T |
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| Q |
119 |
ttcaggtacatttatattgccttattctaaaggtttttgttctgattttgtatttatacgttcttatgatattggtaacttgagatcaaattctaactag |
218 |
Q |
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| T |
47183846 |
ttcaggtacatttatatagccttattctaaaggtttttgttctgattttgtacttatacgttcttatgatattggtaacttgagatcaaattctaactag |
47183945 |
T |
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| Q |
219 |
atcaatctatgttcaaattttatttatcttatgaccaaaactccataatacctaaaaccatttacctt |
286 |
Q |
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| T |
47183946 |
atcaatctatgttcaaattttatttatcttatgaccaaaactccataatacctaaaaccatttacctt |
47184013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 47196634 - 47196745
Alignment:
| Q |
19 |
caagtgacgtaatttttgaggcgaagatcacaccagccgtcatagtatcttgcattatggctgctttcggtggtcttatgtttgggtatgatattggtat |
118 |
Q |
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| T |
47196634 |
caagtgacgtcgtttttgaggctaggatcacagcagctgttgtgatctcttgcatcatggctgctactggtggtcttatgtttggttatgatgttggtat |
47196733 |
T |
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| Q |
119 |
ttcaggtacatt |
130 |
Q |
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| T |
47196734 |
ttcaggtacatt |
47196745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 751544 - 751491
Alignment:
| Q |
72 |
attatggctgctttcggtggtcttatgtttgggtatgatattggtatttcaggt |
125 |
Q |
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| T |
751544 |
attatggctgctaccggtggtcttatgttcggttatgatgttggtgtttcaggt |
751491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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