View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20704_low_1 (Length: 608)
Name: NF20704_low_1
Description: NF20704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20704_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Original strand, 29083791 - 29084385
Alignment:
| Q |
1 |
ttgcttctaagttaggctctatccacaata----aaatagcaaacccataaagtt-aatcttgcggctaagaatttcatcaaagcaaagtaacgttttgg |
95 |
Q |
| |
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|||||||||||||||||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29083791 |
ttgcttctaagttaggct--atccacaatataagaaatacttaacccataaagtttaatcttgcggctaagaatttcatcaaagtaaagtaacgttttgg |
29083888 |
T |
|
| Q |
96 |
ttttttaataccaaagaaactcataactcatcattgctcacaaatactttatattacaaatatgagaagcattatatatccattatttctacatcaccat |
195 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29083889 |
ttttttaataccaaagaaactcataattcatcattgctcacaaatagtttatattacaaatatgagaagcattatatatccattatttctacatcaccat |
29083988 |
T |
|
| Q |
196 |
ttatcaatattttc-atttcttccccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagtgttgtaccttggaaactccta |
294 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29083989 |
ttatcaatattttctatttcttccccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagagttgtaccttggaaactccta |
29084088 |
T |
|
| Q |
295 |
agtttcatttattttgtttttactttattatcttttatctatctctagcatattcaccgtaacaaacaatttcccttatactatattgaccggcacactc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29084089 |
agtttcatttattttgtttttactttattatcttttttctatctctagcatattcaccgtaacaaacaatttcccttatactatattgaccggcacactc |
29084188 |
T |
|
| Q |
395 |
gccggtgcaggcatgcacgccgccacttccgaccaccagattccagctgttaaactaacgagtgttccggggtggtcggtcaaatatggtcgccggtgca |
494 |
Q |
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| T |
29084189 |
gccggtgcaggcatgcacgccgccacttccgaccaccagattccagctgttaaactaacgagtgttccggggtggtcggtcgaatatggtcgccggtgca |
29084288 |
T |
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| Q |
495 |
catttgatgcattaggaattgacaagtgccaaacaggtgactgtggtggaagacttgaatgtgatgggaatggtgcagctccacgtgatgcactttt |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29084289 |
catttgatgcattaggaattgacaagtgccaaacaggtgattgtggtggaagacttgaatgtgatgggaatggtgcagctccacgtgatggactttt |
29084385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 29091114 - 29091522
Alignment:
| Q |
1 |
ttgcttctaagttaggctctatccacaataaaa----tagcaaacccataaagttaatcttgcggctaagaatttcatcaaagcaaagtaacgttttggt |
96 |
Q |
| |
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|||||||||||||||||| ||||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29091114 |
ttgcttctaagttaggct--atccacaataaaagaaatactaaacccataaagttcattttgcggctaagaatttcatcaaagcaaagtaacgttttggt |
29091211 |
T |
|
| Q |
97 |
tttttaataccaaagaaactcataactcatcattgctcacaaatactttatattacaaatatgagaagcattatatatccattatttctacatcaccatt |
196 |
Q |
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||||||||||||||||||||||||| ||||||| || || |||| ||||||||||||||||||| |||||||||| ||||||||||||||||| | |
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| T |
29091212 |
tttttaataccaaagaaactcataattcatcataagacaaaactactctatattacaaatatgagaaacattatatatgcattatttctacatcacatat |
29091311 |
T |
|
| Q |
197 |
tatcaatattttc-atttcttccccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagtgttgtaccttggaaactcctaa |
295 |
Q |
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||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
29091312 |
tatcaattctttctatttctttcccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagagttgtaccttggaaactcttaa |
29091411 |
T |
|
| Q |
296 |
gtttcatttattttgtttttactttattatcttttatctatctctagcatattcaccgtaacaaacaatttcccttatactatattgaccggcacactcg |
395 |
Q |
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||||||||| ||||||||||||||| ||||||||| ||| |||||| |||||||||| |||||||||||| |||||||||||||| | | |||||||||| |
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| T |
29091412 |
gtttcattttttttgtttttactttgttatctttt-tctttctctaccatattcaccataacaaacaattgcccttatactatatggccaggcacactcg |
29091510 |
T |
|
| Q |
396 |
ccggtgcaggca |
407 |
Q |
| |
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|||||||||||| |
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| T |
29091511 |
ccggtgcaggca |
29091522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 491 - 578
Target Start/End: Original strand, 29091624 - 29091711
Alignment:
| Q |
491 |
tgcacatttgatgcattaggaattgacaagtgccaaacaggtgactgtggtggaagacttgaatgtgatgggaatggtgcagctccac |
578 |
Q |
| |
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|||||||||||||||| ||||||| ||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29091624 |
tgcacatttgatgcatccggaattggcaaatgccaaacgggtgattgtggtggaagacttgaatgtgatgggaatggtgcagctccac |
29091711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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