View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20704_low_14 (Length: 211)
Name: NF20704_low_14
Description: NF20704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20704_low_14 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 90712 - 90823
Alignment:
| Q |
70 |
ttatgaacctttttagggcatgaaagatagctctctccccaaccaccgtcgtttctttgtattgtgagaagaaatttaacagctttacaaatagcatcgc |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
90712 |
ttatgaacctttttagggcatgaaagatagctctctccccaaccaccgtcgtttctttgtattgtgagaagaaatttaacagctttacgaatagcatcac |
90811 |
T |
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| Q |
170 |
aattagtataat |
181 |
Q |
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|||||||||||| |
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| T |
90812 |
aattagtataat |
90823 |
T |
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Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 106059 - 105949
Alignment:
| Q |
70 |
ttatgaacctttttagggcatgaaagatagctctctccccaaccaccgtcgtttctttgtattgtgagaagaaatttaacagctttacaaatagcatcgc |
169 |
Q |
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|||||||||||||| |||| ||||||||||||||| ||||| ||||| || | ||| ||| ||||||||||||||||||||||||| | ||||||| ||| |
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| T |
106059 |
ttatgaaccttttttgggcttgaaagatagctctccccccacccaccatcctctctctgtgttgtgagaagaaatttaacagctttgcgaatagcagcgc |
105960 |
T |
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| Q |
170 |
aattagtataa |
180 |
Q |
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|||| |||||| |
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| T |
105959 |
aattggtataa |
105949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 166591 - 166514
Alignment:
| Q |
75 |
aacctttttagggcatgaaagatagctctctccccaaccaccgtcgtttctttgtattgtgagaagaaatttaacagc |
152 |
Q |
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| T |
166591 |
aaccttttttgggcatgaaagatagctctccccccacccaccatcttttccctgtattctcagaagaaatttaacagc |
166514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 13054536 - 13054449
Alignment:
| Q |
70 |
ttatgaacctttttagggcatgaaagatagctctctccccaaccaccgtcgtttctttgtattgtgagaagaaatttaacagctttac |
157 |
Q |
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| T |
13054536 |
ttatgaaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgttgagagaagaaattgaacagctttac |
13054449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 5687384 - 5687464
Alignment:
| Q |
75 |
aacctttttagggcatgaaagatagctctctccccaaccaccgtcgtttctttgtattgtgagaagaaatttaacagcttt |
155 |
Q |
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| T |
5687384 |
aaccttttttgagcatgaaagatggctctctccccacccaccatcctctctttgtattgtaagcagaaatttaacagcttt |
5687464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 5719500 - 5719580
Alignment:
| Q |
75 |
aacctttttagggcatgaaagatagctctctccccaaccaccgtcgtttctttgtattgtgagaagaaatttaacagcttt |
155 |
Q |
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||||||||| | ||||||||||| |||||||||||| ||||| || | |||||||||||| || ||||||||||||||||| |
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| T |
5719500 |
aaccttttttgagcatgaaagatggctctctccccacccaccatcctctctttgtattgtaagcagaaatttaacagcttt |
5719580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 5666314 - 5666394
Alignment:
| Q |
75 |
aacctttttagggcatgaaagatagctctctccccaaccaccgtcgtttctttgtattgtgagaagaaatttaacagcttt |
155 |
Q |
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||||||||| | || |||||||| |||||||||||| ||||| || | |||||||||||| || ||||||||||||||||| |
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| T |
5666314 |
aaccttttttgagcttgaaagatggctctctccccatccaccatcctctctttgtattgtaagcagaaatttaacagcttt |
5666394 |
T |
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