View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20704_low_3 (Length: 504)
Name: NF20704_low_3
Description: NF20704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20704_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 2 - 495
Target Start/End: Complemental strand, 40121603 - 40121093
Alignment:
| Q |
2 |
tgtggtgctttgaaggtcaaggttgtgatgaggctgtggaggcatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttataggatcc |
101 |
Q |
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| T |
40121603 |
tgtggtgctttgaaggtcaaggttgtgatgaggctgtggaggcatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttattggatcc |
40121504 |
T |
|
| Q |
102 |
actttgtatactttgataggtgttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtgaagccaagaat |
201 |
Q |
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| T |
40121503 |
actttgtatactttgataggtgttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtgaagacaagaat |
40121404 |
T |
|
| Q |
202 |
atttggattcaaaagggtattcatttttcattgatccctttggtttcttagtgtttttggatatgtatgaagatttagatgaag---aatatgagccaga |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40121403 |
atttggattcaaaagggtattcatttttcattgatccctttggtttcttagtgtttttggatatgtatgaagatttagatgaagaataatatgagccaga |
40121304 |
T |
|
| Q |
299 |
ataagactccatgtttctgttttatatatgtttttgttttctaatgacggtggaatgtataatagtg----------nnnnnnnnnnnnatacttaatgt |
388 |
Q |
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| T |
40121303 |
ataagactccatgtttctgttttatatatgtttttgttttctaatgacggtggaatgtataatagtgtttatttttatttttattttttatacttaatgt |
40121204 |
T |
|
| Q |
389 |
tatgttgagatatacatttagg----tatagatatgacgaatattaatgttgtaagtgtatgggaaataaatatgaggacaataataattgatgagtgtg |
484 |
Q |
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| T |
40121203 |
tatgttgagatatacatttaggtatatatagatatgacgaatattaatgttgtaagtgtatgggcaataaatatgaggacaataataattgatgagtgtg |
40121104 |
T |
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| Q |
485 |
gaattgaattt |
495 |
Q |
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||||||||||| |
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| T |
40121103 |
gaattgaattt |
40121093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 40092781 - 40092472
Alignment:
| Q |
1 |
ttgtggtgctttgaaggtcaaggttgtgatgaggctgtggaggcatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttataggatc |
100 |
Q |
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|||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40092781 |
ttgtggtgctttgaagatcaagtttgtgatgaggctgtgaaggtatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttattggatc |
40092682 |
T |
|
| Q |
101 |
cactttgtatactttgataggtgttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtgaagccaagaa |
200 |
Q |
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| T |
40092681 |
cactttgtatactttggcaggtgttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtgaagccaagaa |
40092582 |
T |
|
| Q |
201 |
tatttggattcaaaagggtattcatttttcattgatccctttggtttcttagtgtttttggatatgtatgaagatttagatgaagaatatgagccagaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40092581 |
tatttggattcaaaagggtattcatttttcattgatccatttgctttcttcgtgttttgggatatgtatgaagatttagatgaagaatatgagctagaat |
40092482 |
T |
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| Q |
301 |
aagactccat |
310 |
Q |
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|||| ||||| |
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| T |
40092481 |
aagattccat |
40092472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 40125253 - 40124962
Alignment:
| Q |
1 |
ttgtggtgctttgaaggtcaaggttgtgatgaggctgtggaggcatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttataggatc |
100 |
Q |
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|||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40125253 |
ttgtggtgctttgaagatcaagtttgtgatgaggctgtgaaggtatgaactgaggtgcacaagtgagggactgaacaagttctttgaagtttattggatc |
40125154 |
T |
|
| Q |
101 |
cactttgtatactttgataggtgttggtgccattggtgctattggtgccttcttattccatgtctttgttggtgactttcttactgagtgaagccaagaa |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
40125153 |
cactttgtatactttggcaggtgttggtgccattggtgctattggtaacttcttattccatgtctttacaggtgattttcttactgagtgaagccaagaa |
40125054 |
T |
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| Q |
201 |
tatttggattcaaaagggtattcatttttcattgatccctttggtttcttagtgtttttggatatgtatgaagatttagatgaagaatatga |
292 |
Q |
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|| | | || | ||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40125053 |
taatgagtttgacaagggcattcatgtttaattgatccatttggtttcttagtgtttttggatatgtatgaagatttagatgaagaatatga |
40124962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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