View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20704_low_4 (Length: 504)
Name: NF20704_low_4
Description: NF20704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20704_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 12 - 424
Target Start/End: Original strand, 952329 - 952761
Alignment:
| Q |
12 |
atgaattaatggaagaaagagatgaaatgaaacttacagtattcaagtttttccttgcagtctctctactgagtatatcaaaacgatcaagtgcaaggaa |
111 |
Q |
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| T |
952329 |
atgaattaatggaagaaagagatgaaatgaaacttacagtattcaagtttttccttgcagtctctctactgagtatatcaaaacgatcaagtgcaaggaa |
952428 |
T |
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| Q |
112 |
tgttccaagaacagtgatcaatagtaccttaagaacaggcatcaatgcaacaataaaaagcttcaagaactccattttgtatttc--tatc--------- |
200 |
Q |
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| T |
952429 |
tgttccaagaacagtgatcaatagtaccttaagaacaggcatcaatgcaacaataaaaagcttcaagaattccattttgtatttctttatcttctttctt |
952528 |
T |
|
| Q |
201 |
--------caaaaaatacaaacctgttacatgaaacaag-ttcaattaaataaacatcaaataacatgtttaatcaaaattataatttatttatttttat |
291 |
Q |
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| T |
952529 |
gtctattacaaaaaatacaattctgttacatgaaacaagtttcaattaaataaacatcaaataacatgtttaataaaacttataatttatttatttttat |
952628 |
T |
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| Q |
292 |
cttcttcaaacgtagtcgtttcttcttaaatcaaatcaaaattnnnnnnnttcgaaaagtcaaatccatattgtctaaaatttagatcaaatacattgtt |
391 |
Q |
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| T |
952629 |
cttcttcaaacgtagtcgtttcttcttaaatcaaatcaaaattaaaaaaattcgaaaagtcaaatgcatattatctaaaatttagatcaaatacattgtt |
952728 |
T |
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| Q |
392 |
tactttctcaaacacttttacttatatttcgtt |
424 |
Q |
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| T |
952729 |
tactttctcaagcacttttacttatatttcgtt |
952761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 296
Target Start/End: Complemental strand, 1099609 - 1099325
Alignment:
| Q |
12 |
atgaattaatggaagaaagagatgaaatgaaacttacagtattcaagtttttccttgcagtctctctactgagtatatcaaaacgatcaagtgcaaggaa |
111 |
Q |
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| T |
1099609 |
atgaattaatggaagaaagagatgaaatgaaacttacagtattcaagtttttccttgcagtctctctactgagtatatcaaaacgatcaagtgcaaggaa |
1099510 |
T |
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| Q |
112 |
tgttccaagaacagtgatcaatagtaccttaagaacaggcatcaatgcaacaataaaaagcttcaagaactccattttgtatttctatccaaaaaataca |
211 |
Q |
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| T |
1099509 |
tgttccaagaacagtgatcaatagtaccttaagaacaggcatcaatgcaacaataaaaagcttcaagaactccattttgtatttctatccaaaaaataca |
1099410 |
T |
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| Q |
212 |
aacctgttacatgaaacaagttcaattaaataaacatcaaataacatgtttaatcaaaattataatttatttatttttatcttct |
296 |
Q |
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| T |
1099409 |
aacctgttacatgaaacaagttcaattaaataaacatcaaataacatgtttaatcaaaattataatttatttattttaatcttct |
1099325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 457 - 504
Target Start/End: Original strand, 952794 - 952841
Alignment:
| Q |
457 |
caacttaattcaactagctagaatgagaaatgaagaaatgttgataaa |
504 |
Q |
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| T |
952794 |
caacttaattcaactagctagaatgagaaatgaagaaatgttgataaa |
952841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 501
Target Start/End: Complemental strand, 1099251 - 1099208
Alignment:
| Q |
458 |
aacttaattcaactagctagaatgagaaatgaagaaatgttgat |
501 |
Q |
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| T |
1099251 |
aacttaactcaaccagctagaatgaaaaatgaagaaatgttgat |
1099208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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