View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20704_low_9 (Length: 345)
Name: NF20704_low_9
Description: NF20704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20704_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 160 - 337
Target Start/End: Complemental strand, 33987293 - 33987116
Alignment:
| Q |
160 |
tcataacaagtcgctgcagttgcaccacttctagaaacgatcaagtcaagtctgcagcatcatttgcagacattagaaaaggataaaaatacagcaaaga |
259 |
Q |
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| T |
33987293 |
tcatagcaagtcgctgcagttgcaccacttctagaaacgatcaagtcaagtctgcagcatcatttgcagacattagaaaaggataaaaatacagcaaaga |
33987194 |
T |
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| Q |
260 |
gagaaaggactaaaatgcagcaaagtgaagcaaaggaaataatacctcttctgaattggaaacaaggatgttcttctc |
337 |
Q |
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| T |
33987193 |
gagaaaggactaaaatgcagcaaagtgaagcaaaggaaataatacctcttctgaattggaaacaaggatgttcttctc |
33987116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 33987508 - 33987368
Alignment:
| Q |
20 |
aggttaacaatttatttcttgtgatttattttgtggctgagccctcctcagagatcaaaattctgctaaagggtcgaaatagaaatggctattcaactta |
119 |
Q |
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| T |
33987508 |
aggttaacaatttatttcttgtgatttttttggtggctgagccctcctcagagatcaaaattctgctaaagggtcgaaatagaaatggctattcaactta |
33987409 |
T |
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| Q |
120 |
atttagctgaattgttgcatttactttttagtttataaact |
160 |
Q |
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| T |
33987408 |
atttagctgcattgttgcatttactttttagtttataaact |
33987368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 8974297 - 8974165
Alignment:
| Q |
27 |
caatttatttcttgtgatttattttgtggctgagccctcctcagagatcaaaattctgctaaagggtcgaaatagaaatggctattcaacttaatttagc |
126 |
Q |
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| T |
8974297 |
caatttatttcttgtgtttt-tttggaggttggtccctcctcagagatcaaaattctgctaaagggtcaaaatagaaatagctattcaacttaatttagc |
8974199 |
T |
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| Q |
127 |
tgaattgttgcatttactttttagtttataaact |
160 |
Q |
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| T |
8974198 |
tgaattgttgcatttactttttagtttatgaact |
8974165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 8987894 - 8987815
Alignment:
| Q |
80 |
ttctgctaaagggtcgaaatagaaatggctattcaacttaatttagctgaattgttgcatttactttttagtttataaac |
159 |
Q |
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| T |
8987894 |
ttctgctaaagtgtcgaaatagaaatggttgttcaactaaatttagctgaattgttgcatttactttttagtttataaac |
8987815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 8995827 - 8995748
Alignment:
| Q |
80 |
ttctgctaaagggtcgaaatagaaatggctattcaacttaatttagctgaattgttgcatttactttttagtttataaac |
159 |
Q |
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| T |
8995827 |
ttctgctaaagtgtcgaaatagaaatggttgttcaactaaatttagctgaattgttgcatttactttttagtttataaac |
8995748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 8991861 - 8991782
Alignment:
| Q |
160 |
tcataacaagtcgctgcagttgcaccacttctagaaacgatcaagtcaagtctgcagcatcatttgcagacattagaaaa |
239 |
Q |
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|||||||||||| ||||| | |||||| |||||||||| ||||||||||||||||||||| || |||||||||||||||| |
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| T |
8991861 |
tcataacaagtcactgcactggcaccatttctagaaacaatcaagtcaagtctgcagcattatatgcagacattagaaaa |
8991782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 9020121 - 9020042
Alignment:
| Q |
160 |
tcataacaagtcgctgcagttgcaccacttctagaaacgatcaagtcaagtctgcagcatcatttgcagacattagaaaa |
239 |
Q |
| |
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|||||| |||| ||||| ||||| ||||||||||||| |||||||||||| ||||||||||| |||||||||||||||| |
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| T |
9020121 |
tcataaaaagtgactgcatttgcagcacttctagaaacaatcaagtcaagtatgcagcatcatatgcagacattagaaaa |
9020042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 8995696 - 8995614
Alignment:
| Q |
157 |
aactcataacaagtcgctgcagttgcaccacttctagaaacgatcaagtcaagtctgcagcatcatttgcagacattagaaaa |
239 |
Q |
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||||||||||||||| ||||||||| ||| |||||||||| |||||||||||||||||||||||| | | || ||||||||| |
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| T |
8995696 |
aactcataacaagtcactgcagttggaccgtttctagaaacaatcaagtcaagtctgcagcatcatatactgaaattagaaaa |
8995614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 9026205 - 9026154
Alignment:
| Q |
81 |
tctgctaaagggtcgaaatagaaatggctattcaacttaatttagctgaatt |
132 |
Q |
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||||||||||||||||||||||||||| | ||||||| |||||||||||||| |
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| T |
9026205 |
tctgctaaagggtcgaaatagaaatggttgttcaactaaatttagctgaatt |
9026154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 8984520 - 8984463
Alignment:
| Q |
182 |
caccacttctagaaacgatcaagtcaagtctgcagcatcatttgcagacattagaaaa |
239 |
Q |
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|||||||||||||||| |||||||| ||| ||||||||||| || ||||||||||||| |
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| T |
8984520 |
caccacttctagaaacaatcaagtctagtttgcagcatcatatgaagacattagaaaa |
8984463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 8974034 - 8973987
Alignment:
| Q |
192 |
agaaacgatcaagtcaagtctgcagcatcatttgcagacattagaaaa |
239 |
Q |
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|||||| || ||||||||||||||||||||| | |||||||||||||| |
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| T |
8974034 |
agaaacaatgaagtcaagtctgcagcatcatatacagacattagaaaa |
8973987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 9020293 - 9020231
Alignment:
| Q |
27 |
caatttatttcttgtgatttattttg-tggctgagccctcctcagagatcaaaattctgctaa |
88 |
Q |
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|||||||||||||||| ||| |||| ||||||| ||| |||||||||||||||| ||||||| |
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| T |
9020293 |
caatttatttcttgtgttttttttttatggctgatcccccctcagagatcaaaatactgctaa |
9020231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 8973024 - 8972980
Alignment:
| Q |
160 |
tcataacaagtcgctgcagttgcaccacttctagaaacgatcaag |
204 |
Q |
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|||||||||||| ||||| |||||||| |||||||||| |||||| |
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| T |
8973024 |
tcataacaagtcactgcacttgcaccatttctagaaacaatcaag |
8972980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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