View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20705_high_1 (Length: 434)
Name: NF20705_high_1
Description: NF20705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20705_high_1 |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 244 - 434
Target Start/End: Original strand, 9122575 - 9122765
Alignment:
| Q |
244 |
gcagcagaacagcaccaacaattcagcggacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg |
343 |
Q |
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| T |
9122575 |
gcagcagaacagcaccaacaattcagccgacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg |
9122674 |
T |
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| Q |
344 |
ctgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctcccctttaaacggctaagactcca |
434 |
Q |
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| T |
9122675 |
ctgcagctcgactcctcttcaatcattctcccggatctcaactccattcatagaataaccaagggctcccctttaaacggctaagactcca |
9122765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 244 - 434
Target Start/End: Original strand, 9130671 - 9130861
Alignment:
| Q |
244 |
gcagcagaacagcaccaacaattcagcggacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg |
343 |
Q |
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| T |
9130671 |
gcagcagaacagcaccaacaattcagccgacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg |
9130770 |
T |
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| Q |
344 |
ctgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctcccctttaaacggctaagactcca |
434 |
Q |
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| T |
9130771 |
ctgcagctagactcctcttcaatcattctcccgaatcccaactccattcatagaataaccaagggctcccctttaagcgggtaagactcca |
9130861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 246 - 434
Target Start/End: Original strand, 24524526 - 24524715
Alignment:
| Q |
246 |
agcagaacagcaccaacaattcagcggacagaaagcagcaaccacttccaacagcccccaaaacca-gaaaaaagacatccagacggaccactgatctgc |
344 |
Q |
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| T |
24524526 |
agcagaacagcaccaacaattcagccgacagaaagcagcaaccacttccaacagcccccaaaaccaagaaaaaagacatccagacggaccactgatctgc |
24524625 |
T |
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| Q |
345 |
tgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctcccctttaaacggctaagactcca |
434 |
Q |
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| T |
24524626 |
tgcagctggactcctcttcaatcattctcccgaatcccaactccattcatagaataaccaagggctcccctttaagcgggtaagactcca |
24524715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 30 - 188
Target Start/End: Original strand, 35442988 - 35443146
Alignment:
| Q |
30 |
atttaaccacttattttacataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattct |
129 |
Q |
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| T |
35442988 |
atttaaccacttattttaaataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattct |
35443087 |
T |
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| Q |
130 |
atacaaaatttccaactgcataaaaccacgagaagaaatgcaatctatacaaatataca |
188 |
Q |
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| T |
35443088 |
atacaaaatttccaactgcataaaaccacgagaagaaatgcaatctatacaaatataca |
35443146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 359
Target Start/End: Original strand, 10323079 - 10323126
Alignment:
| Q |
312 |
gaaaaaagacatccagacggaccactgatctgctgcagctggactcct |
359 |
Q |
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| T |
10323079 |
gaaaaatgacatccagacggaccacttatctgcttcagctggactcct |
10323126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 16780358 - 16780329
Alignment:
| Q |
35 |
accacttattttacataaatatatgtattt |
64 |
Q |
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| T |
16780358 |
accacttattttacataaatatatgtattt |
16780329 |
T |
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