View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20705_high_5 (Length: 334)
Name: NF20705_high_5
Description: NF20705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20705_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 30 - 308
Target Start/End: Original strand, 3016965 - 3017243
Alignment:
| Q |
30 |
gtatcttcttttgaaaatctacatgatatgtcaagccgttggtatgaaacaaggatttcaatccttgaaacagtcgcaaaagtcaggttatgtgtggtaa |
129 |
Q |
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| T |
3016965 |
gtatcttcttttgaaaatctacatgatatgtcaagccgttggtatgaaacaaggatttcaatccttgaaacagttgcaaaagtcaggttatgtgtggtaa |
3017064 |
T |
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| Q |
130 |
tgccggatcttgaatgtgatgccctcattttggagatgtttcggcttttcttgaagacaataaggtaagaactgttgcatacatgactacaggtttagca |
229 |
Q |
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| T |
3017065 |
tgctggatcttgaatgtgatgccctcattttggagatgtttcggcttttcttgaagacaataaggtaagaactgttgcatacatgactacaggtctagca |
3017164 |
T |
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| Q |
230 |
ttatagcttcggtattttatctttgcatttcttagattttacgttgaacttgaccccacaaaactgacttgtaaggtga |
308 |
Q |
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| T |
3017165 |
ttatagcttcggtattttatctttgcatttcttagattttacgttgaacttgaccccacaaaactgacttgtaaggtga |
3017243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 3032701 - 3032867
Alignment:
| Q |
30 |
gtatcttcttttgaaaatctacatgatatgtcaagccgttggtatgaaacaaggatttcaatccttgaaacagtcgcaaaagtcaggttatgtgtggtaa |
129 |
Q |
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| T |
3032701 |
gtatcttcatttgaaaatctacatgataagtcaagccgatggtactcaaagaggactttaatcctcgaaacagttgcaaaagtcaggtcatgtgtggtaa |
3032800 |
T |
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| Q |
130 |
tgccggatcttgaatgtgatgccctcattttggagatgtttcggcttttcttgaagacaataaggta |
196 |
Q |
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| T |
3032801 |
tgctggatcttgaatgcgatgccctcattttggagatgtttcagcatttcttgaagacaataaggta |
3032867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 195
Target Start/End: Complemental strand, 48970020 - 48969855
Alignment:
| Q |
30 |
gtatcttcttttgaaaatctacatgatatgtcaagccgttggtatgaaacaaggatttcaatccttgaaacagtcgcaaaagtcaggttatgtgtggtaa |
129 |
Q |
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|||||||| ||||||||||||||||||| || |||||| | |||||| | |||| | |||| ||||| || ||||| ||||| | ||||||||||| |
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| T |
48970020 |
gtatcttcatttgaaaatctacatgataagttaagccgatcgtatgagaataggagaatagtcctcgaaactgttgcaaaggtcagatcatgtgtggtaa |
48969921 |
T |
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| Q |
130 |
tgccggatcttgaatgtgatgccctcattttggagatgtttcggcttttcttgaagacaataaggt |
195 |
Q |
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| T |
48969920 |
tgttggaccttgattgtgatgcgctgattttggagatgtttcagcattttttgaagaccataaggt |
48969855 |
T |
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