View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20705_high_9 (Length: 319)
Name: NF20705_high_9
Description: NF20705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20705_high_9 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 29 - 308
Target Start/End: Original strand, 46616 - 46893
Alignment:
| Q |
29 |
tgaggaaaggggtgattgagattccatgctacactaaaaaacaactaatttacatgaagnnnnnnnnn-catctcgcctctccatagaaaaca-tactct |
126 |
Q |
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| T |
46616 |
tgaggaaaggggtgattaagatgccatgctacactaaaaaacaactaatt-acatgaagaaaaaaaaaacatctcgcctctccatagaaaacagtactct |
46714 |
T |
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| Q |
127 |
tgtacnnnnnnnnnnnnnnngtactctccgccgcttgcatcttcttccaccccaatccaaatcctcctcttacaagatgtagctattcaggatggtggtg |
226 |
Q |
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| T |
46715 |
tgtaccaaaaaaaaaa----gtactctccgccgcttgcatcttcttcctccccaatccaaatcctcctcttacaagatgtagctattcaggatggtggtg |
46810 |
T |
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| Q |
227 |
cgacgagggagggttgtcctccgcaccacccc-tttgtcagatctgctggcgaaggtgttgttgctgttctctggtggtctgt |
308 |
Q |
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| T |
46811 |
cgacgagggagggttgtcctccgcaccaccccttttgtcagatcttccggcgacggtgttgttgctgttctctggcggtctgt |
46893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 29 - 308
Target Start/End: Complemental strand, 14793115 - 14792838
Alignment:
| Q |
29 |
tgaggaaaggggtgattgagattccatgctacactaaaaaacaactaatttacatgaagnnnnnnnnn-catctcgcctctccatagaaaaca-tactct |
126 |
Q |
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| T |
14793115 |
tgaggaaaggggtgattaagatgccatgctacactaaaaaacaactaatt-acatgaagaaaaaaaaaacatctcgcctctccatagaaaacagtactct |
14793017 |
T |
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| Q |
127 |
tgtacnnnnnnnnnnnnnnngtactctccgccgcttgcatcttcttccaccccaatccaaatcctcctcttacaagatgtagctattcaggatggtggtg |
226 |
Q |
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| T |
14793016 |
tgtaccaaaaaaaaaa----gtactctccgccgcttgcatcttcttcctccccaatccaaatcctcctcttacaagatgtagctattcaggatggtggtg |
14792921 |
T |
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| Q |
227 |
cgacgagggagggttgtcctccgcaccacccc-tttgtcagatctgctggcgaaggtgttgttgctgttctctggtggtctgt |
308 |
Q |
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| T |
14792920 |
cgacgagggagggttgtcctccgcaccaccccttttgtcagatcttccggcgacggtgttgttgctgttctctggcggtctgt |
14792838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 269
Target Start/End: Original strand, 36043677 - 36043799
Alignment:
| Q |
147 |
gtactctccgccgcttgcatcttcttccaccccaatccaaatcctcctcttacaagatgtagctattcaggatggtggtgcgacgagggagggttgtcct |
246 |
Q |
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| T |
36043677 |
gtactctctgctgcttgcattttctttctccccaatccaaatcctccttttacaagatatagttgttcaggatggtggtgcgatg-gggagagttgtcct |
36043775 |
T |
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| Q |
247 |
ccgcaccacc-cctttgtcagatc |
269 |
Q |
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| T |
36043776 |
ccgcaccacctcttttgtcagatc |
36043799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 47897246 - 47897146
Alignment:
| Q |
156 |
gccgcttgcatcttcttccaccccaatccaaatcctcctcttacaagatgtagctattcaggatggtggtgcgacgagggagggttgtcctccgcaccac |
255 |
Q |
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| T |
47897246 |
gccgcttacaccttcttccacctcaatccaaaccctcaatttgcaagatgtagccggtcagggtggtggtgcgacgagtgacagcggtcctccgcaccac |
47897147 |
T |
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| Q |
256 |
c |
256 |
Q |
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| T |
47897146 |
c |
47897146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 38499779 - 38499699
Alignment:
| Q |
153 |
tccgccgcttgcatcttcttccaccccaatccaaatcctcctcttacaagatgtagctattcaggatggtggtgcgacgag |
233 |
Q |
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| T |
38499779 |
tccgccgcttacaccttcttccaccccaatccaaaccctcaatttgcaagatgtagccggtcagggtggtggtgcgacgag |
38499699 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 46742460 - 46742526
Alignment:
| Q |
167 |
cttcttccaccccaatccaaatcctcctcttacaagatgtagctattcaggatggtggtgcgacgag |
233 |
Q |
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| T |
46742460 |
cttcttccaccccaatccaaaccctcaatttacaagatgtagccggtcagggtggtggtgcgacgag |
46742526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 11388000 - 11387922
Alignment:
| Q |
155 |
cgccgcttgcatcttcttccaccccaatccaaatcctcctcttacaagatgtagctattcaggatggtggtgcgacgag |
233 |
Q |
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| T |
11388000 |
cgccgcttacaccttcttccacccaaatccaaaccctcaatttgcaagatgtagccgctcagggtggtggtgcgacgag |
11387922 |
T |
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