View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_high_1 (Length: 802)
Name: NF20706_high_1
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 230 - 760
Target Start/End: Complemental strand, 5717632 - 5717106
Alignment:
| Q |
230 |
atgatattgtggatgcacgtgtttgctgccaaaatagctatgaagcacgaatggggtatgctttgctggaaagaaggtaaggtttaaaacaaatgacaac |
329 |
Q |
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| T |
5717632 |
atgatattgtggatgcacgtgtttgctgccaaaatagctatgaagcacgaatggggtatgctttgctggaaagaaggtaaggtttaacacaaatgacaac |
5717533 |
T |
|
| Q |
330 |
tagaagcaataaaagcattgttgttgcagtgacaactttgtaaatatgggacacaaatgtaaacagcaaagcaatagcaagttttaggctgtataagtga |
429 |
Q |
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| T |
5717532 |
tagaatcaataaaagcattgttgttgcagtgacaactttgtaaatatgggacacaaatgtaaacagcaaagcaatagcaagttttaggctgtataagtga |
5717433 |
T |
|
| Q |
430 |
cataaaaacatgagggtacacatgacctaaaaggaatcaatgaaatcataaattaaatggtcacacacattcatataaaaacaatagaaggtgagtctct |
529 |
Q |
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| T |
5717432 |
cataaaaacatgagggtacacatgacctaaaaggaatcaatgaaatcataaattaaatggtcacacacattcatataaaaacaatagaaagtgagtccct |
5717333 |
T |
|
| Q |
530 |
tttcnnnnnnnnatattttgtgtaaaatacaaagatagaaaagagtgtttctcttttgtccacgttttaccagagaactagctttggtttttgttgtcat |
629 |
Q |
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| T |
5717332 |
ttt------tttatattttgtgtaaaatacaaagatagaaaagagtgtttctcttttgtccacgttttaccagagaactagctttggtttttgttgtcat |
5717239 |
T |
|
| Q |
630 |
tattaactgaatcatgacaagacaagtcatcataagcagtacaaatatatagaacatgtaaccctgttttatttgtaaataatctactatgttccaacct |
729 |
Q |
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| T |
5717238 |
tattaactgaatcatgacaagacaagtcatcataagcagtacaaatatatagaacaagtaaccctgttttatttgtaaataatctaccatgttccaacct |
5717139 |
T |
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| Q |
730 |
ataagatatgtatta--cacacttcaaattaag |
760 |
Q |
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| T |
5717138 |
ataagatatatattattgacacttcaaattaag |
5717106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 5717784 - 5718017
Alignment:
| Q |
1 |
gtgaatgcgaagtggaaaaacaatagtgagactgtgattttgttgaagctttaaaatgtaacttttattaaaatcgcggtagttcattttgattccatca |
100 |
Q |
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| T |
5717784 |
gtgaatgcgaagtggaaaaacaacagtgagactgtgattttgttgaagctttaaaatgtaacttttatcaaaatcgcggcagttcattttgattccatca |
5717883 |
T |
|
| Q |
101 |
atctcactgcaaatccaatcatgacaaattatagaagtatataatgattgaactcaacattgtttgttattgcagcagttaactttttcttaaattactt |
200 |
Q |
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| T |
5717884 |
atctcactacaaatccaatcatgacaaattatagaagtatataatgattgaactcaacattgtttgttattgcagcagttaactttttcttaaattactt |
5717983 |
T |
|
| Q |
201 |
gatattataattttggaatttcacactttatgat |
234 |
Q |
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| T |
5717984 |
gatattataattttggaatttcacactttatgat |
5718017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 23955569 - 23955534
Alignment:
| Q |
31 |
actgtgattttgttgaagctttaaaatgtaactttt |
66 |
Q |
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| T |
23955569 |
actgtgattttgttgaagctttaaaatgtaactttt |
23955534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 13712362 - 13712324
Alignment:
| Q |
35 |
tgattttgttgaagctttaaaatgtaacttttattaaaa |
73 |
Q |
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| T |
13712362 |
tgattttgttgaagctctaaaatgtaacttttatcaaaa |
13712324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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