View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_high_10 (Length: 498)
Name: NF20706_high_10
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 13 - 481
Target Start/End: Original strand, 34665359 - 34665827
Alignment:
| Q |
13 |
aatattaacagaaacaagagcagcttttgcctgcataataaaatcttcgattgtatctggtctgtcagataagcatcctggaggtacaacaggaagagga |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34665359 |
aatattaacagaaacaagagcagcttttgcctgcataataaaatctttgattgtatctggtctgtcagataagcatcctggaggtacaacaggaagagga |
34665458 |
T |
|
| Q |
113 |
tcctacataattacattatcagttgatagattggacttgttcatttcttattaaacatatagccaatatgaagatttgttattttaaacgaaaattagat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34665459 |
tcctacataattacattatcagttgatagattggacttgttcatttcttattaaacatatagccaatatgaagatttgttattttaaacgaaaattagat |
34665558 |
T |
|
| Q |
213 |
acctttcctagtattccaccgtacaaaagctctagagccctcttcccatactcgctatcataattatatgcatttaacgaaggtccagccctgtaaagtt |
312 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34665559 |
acctttcctagtattccaccgtataaaagctctagagccctcttcccatactcgctatcataattatatgcatttaacgaaggtccagccctgtaaagtt |
34665658 |
T |
|
| Q |
313 |
cacaggaagtcgggaacaacattgactaagatgataaataannnnnnnccatattggctcattgaaaacacaactgatgaatctaacatacctacgatct |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34665659 |
cacaggaagtcgggaacaacattgactaagatgataaataaaatttttccatattggctcattgaaaacacaactgatgaatctaacatacctacgatct |
34665758 |
T |
|
| Q |
413 |
ccctgagtcaaagctccaagggattccaatctctttgcaacagctgatgcaaaccggcgttctccacca |
481 |
Q |
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| T |
34665759 |
ccctgagtcaaagctccaagggattccaatctctttgcaacagctgatgcaaaccggcgttctccacca |
34665827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 13 - 481
Target Start/End: Original strand, 26959129 - 26959597
Alignment:
| Q |
13 |
aatattaacagaaacaagagcagcttttgcctgcataataaaatcttcgattgtatctggtctgtcagataagcatcctggaggtacaacaggaagagga |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26959129 |
aatattaacagaaacaagagcagcttttgcctgcataataaaatcttagattgtatctggtctgtcagataagcatcctggaggtacaacaggaagagga |
26959228 |
T |
|
| Q |
113 |
tcctacataattacattatcagttgatagattggacttgttcatttcttattaaacatatagccaatatgaagatttgttattttaaacgaaaattagat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
26959229 |
tcctacataattacattatcagttgatagattggacttgttcatttcttattaaacatatagccaatatgaagatttattattttaaaagaaaattagat |
26959328 |
T |
|
| Q |
213 |
acctttcctagtattccaccgtacaaaagctctagagccctcttcccatactcgctatcataattatatgcatttaacgaaggtccagccctgtaaagtt |
312 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26959329 |
acctttcctagtattccaccgtaaaaaagctctagagccctcttaccatactcgctatcataattatatgcatttaacgaaggtccagccctgtaaagtt |
26959428 |
T |
|
| Q |
313 |
cacaggaagtcgggaacaacattgactaagatgataaataannnnnnnccatattggctcattgaaaacacaactgatgaatctaacatacctacgatct |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26959429 |
cacaggaagtcgggaacaacattgactaagatgataaataaaatttttccatattggctcattgaaaacacaactgatgaatctaacatacctacgatct |
26959528 |
T |
|
| Q |
413 |
ccctgagtcaaagctccaagggattccaatctctttgcaacagctgatgcaaaccggcgttctccacca |
481 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26959529 |
ccctgagtcaaagctccaagggattccaatctctttgcaacagctgatgcaaaccggcgttctccacca |
26959597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 23 - 481
Target Start/End: Original strand, 26844652 - 26845102
Alignment:
| Q |
23 |
gaaacaagagcagcttttgcctgcataataaaatcttcgattgtatctggtctgtcagataagcatcctggaggtacaacaggaagaggatcctaca--- |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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|
| T |
26844652 |
gaaagaagagcagcttttgcctgcataataaaatctttgattgtatctggtctgtcagataagcatcctggaggtacaacaggaaggggatcctgcacaa |
26844751 |
T |
|
| Q |
120 |
-taattac-attatcagttgatagattggacttgttcatttcttattaaacatatagccaatatgaagatttgttattttaaacgaaaattagatacctt |
217 |
Q |
| |
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||||||| |||||||| ||| |||||||| ||||||||||||||||||| ||| | ||||||| | |||||||||| | ||| ||||||| |||| |
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|
| T |
26844752 |
ttaattacttttatcagtagatggattggacctgttcatttcttattaaacttattgtcaatatgcacatttgttattatcaacaaaaattaattacccg |
26844851 |
T |
|
| Q |
218 |
tcctagtattccaccgtacaaaagctctagagccctcttcccatactcgctatcataattatatgcatttaacgaaggtccagccctgtaaagttcacag |
317 |
Q |
| |
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| ||||||||| |||||||||| || || ||||||||||| | |||||||||||||||||| |||||||||| || ||||||||| || |||| |
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| T |
26844852 |
ctccagtattccattgtacaaaagcatcagtgctctcttcccataagcactatcataattatatgcacttaacgaaggccctgccctgtaatgtacaca- |
26844950 |
T |
|
| Q |
318 |
gaagtcgggaacaacattgactaagatgataaataannnnnnnccatattggctcattgaaaacacaactgatgaatctaacatacctacgatctccctg |
417 |
Q |
| |
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| |||||||| |||||||| |||| |||| |||||||| ||||||||||||| || |||| || | ||||||||||||||| |
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| T |
26844951 |
-------gaaacaacatcagctaagatgttaaa----atttatccatgttggctcactgaaaacacaactcat-aatcccacttgcctacgatctccctg |
26845038 |
T |
|
| Q |
418 |
agtcaaagctccaagggattccaatctctttgcaacagctgatgcaaaccggcgttctccacca |
481 |
Q |
| |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
26845039 |
agtcaaagctccaagggattctaatctcttagcaacagctgatgcaaaccggcgttctccacca |
26845102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 18459390 - 18459488
Alignment:
| Q |
19 |
aacagaaacaagagcagcttttgcctgcataataaaatcttcgattgtatctggtctgtcagataagcatcctggaggtacaacaggaagaggatccta |
117 |
Q |
| |
|
|||||| |||||||||||||||||||| || || ||||||| | |||||||||||||||||| | ||||| |||||||||||||| |||| |||||| |
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|
| T |
18459390 |
aacagatacaagagcagcttttgcctgaatgatgaaatcttgaacagtatctggtctgtcagatgaacatcccggaggtacaacaggtagagaatccta |
18459488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 370 - 481
Target Start/End: Original strand, 18460434 - 18460547
Alignment:
| Q |
370 |
ctcattgaaaacacaa--ctgatgaatctaacatacctacgatctccctgagtcaaagctccaagggattccaatctctttgcaacagctgatgcaaacc |
467 |
Q |
| |
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||||||||||| |||| | ||| |||| ||||| ||| || || |||||||||||||| ||||| ||||| |||||||| |||||| ||||||||| | |
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| T |
18460434 |
ctcattgaaaatacaaaaccgataaatccaacatgcctgcggtccccctgagtcaaagcaccaagagattctaatctcttcgcaacaattgatgcaaatc |
18460533 |
T |
|
| Q |
468 |
ggcgttctccacca |
481 |
Q |
| |
|
| |||||||||||| |
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|
| T |
18460534 |
gtcgttctccacca |
18460547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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