View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20706_high_19 (Length: 441)
Name: NF20706_high_19
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_high_19 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 40441696 - 40442117
Alignment:
| Q |
18 |
ttagtaagtgatttttgaagtgaatatgtgaatttggtgatctttaaattgagcagggtaagattaaataaatatagtactatttatttgatagaaaata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40441696 |
ttagtaagtgatttttgaagtgaatatgtgaatttggtgatctttaaattgagcagggtaagattaaataaatatagtactatttatttgatagaaaata |
40441795 |
T |
|
| Q |
118 |
tttatggcttccacnnnnnnnnnnnnnnnnnncagaattgttttcgcaaatcttatctggtggagcttaatacttaagtcacttttgatgaagattggaa |
217 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40441796 |
tttatggcttccactttttttttttttttt--cagaattgttttcgcaaatcttatctggtggagcttaatacttaagtcacttttgatgaagattggaa |
40441893 |
T |
|
| Q |
218 |
atagaggagctttctatctgtgagtatgaggtatatgtaaatcaaatgctaataatgttattgctccttggtcggtcatgcatagtcatctaactggttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40441894 |
atagaggagctttctatctgtgagtatgaggtatatgtaaatcaaatgctaataatgttattgctccttggtcggtcatgcatagtcatctaactggttt |
40441993 |
T |
|
| Q |
318 |
atatcctgcattctggtaggtatctctgcattctgcattatagaacctttggtaggttaagattcaagctttgaaacacctcgactcattatcattgctt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40441994 |
atatcctgcattctggtaggtatctctgcattctgcattatagaacctttggtaggttaagattcaagctttgaaacacctcgactcattatcattgctt |
40442093 |
T |
|
| Q |
418 |
gattatactgatgcatctttactt |
441 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
40442094 |
gattatactgatgcatctttactt |
40442117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 441
Target Start/End: Original strand, 18812828 - 18812910
Alignment:
| Q |
359 |
agaacctttggtaggttaagattcaagctttgaaacacctcgactcattatcattgcttgattatactgatgcatctttactt |
441 |
Q |
| |
|
||||| |||| |||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
18812828 |
agaacatttgataggttaagatttaagctttgaaacatctcgactcattattattgcttgattatattgatgcacctttactt |
18812910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University