View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_high_22 (Length: 434)
Name: NF20706_high_22
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 7265998 - 7266397
Alignment:
| Q |
16 |
attgatgcatcgcagccctgtcgttaaaagtataatgaagagaaatttttcagctccttgacatatgcatgcaaaagaatccaaagcaaatttaacaaat |
115 |
Q |
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| T |
7265998 |
attgatgcatcgcagccctgtcgttaaaagtacaatgaagagaaatttttcagctccttgacatatgcatgcaaaagaatccaaagcaaatttaacaaat |
7266097 |
T |
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| Q |
116 |
gcaaagcaatatatactacaaaatagctcaacaaaaagatacatgattttatatactaagaataagaattaattccttatgaaatgaatctannnnnnnc |
215 |
Q |
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| T |
7266098 |
ggaaagcaatatatactacaaaatagctcaacaaaaagatacatgattttatatactaagaataagaattaattccttatgaaatgaatctatttttttc |
7266197 |
T |
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| Q |
216 |
tatcaaaagttgttggcaaattaagaaagtgtattcaggaagacttagatacatgattatgatattattttatattttacttgcggtcacaattcttgat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7266198 |
tatcaaaagttgttggcaaattaagaaagtgtattcaggaagacttagatacatgattatgatattattttatgttttacttgcggtcacaattcttgat |
7266297 |
T |
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| Q |
316 |
attatatcgaagtacgatcaaatgtgtccggtacaaatgcaaagacttaaaaacctttatgtcgcgactcagaccagtatttagaacatgtattgctatt |
415 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7266298 |
attatatcgaagtacgatcaaatgtgtccggtgcaaatgcaaagacttaaaaacctttatgtcgcgactcagaccagtatttagaacatgtattgctatt |
7266397 |
T |
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