View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_high_24 (Length: 409)
Name: NF20706_high_24
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 118 - 393
Target Start/End: Complemental strand, 1218017 - 1217742
Alignment:
| Q |
118 |
gtacatttgagagtgagagaggaaaaagagaggagattctgagtggtggaatttggcatgagaacaaaagaggaagtgctgtctttgtataccccacttg |
217 |
Q |
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| T |
1218017 |
gtacatttgagagtgagagaggaaaaagagaggagattctgagtggtggaatttggcatgagaacaaaagaggaagtgctgtctttgtataccccacttg |
1217918 |
T |
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| Q |
218 |
tgcatgaggaattattggggtttcacgtgcacatattgagaaaagaaaaacaagatgtcttgtgtttggattttggtgtaagtgggttttagagactttg |
317 |
Q |
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| T |
1217917 |
tgcatgaggaattattggggtttcacgtgcacatattgagaaaagaaaaacaagatgtcttgtgtttggattttggtgtaagtgggttttagagactttg |
1217818 |
T |
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| Q |
318 |
gatttttacatcatcttattggcctttcttaatccctcttagatatcaatgaataggactcaactacccttcaaat |
393 |
Q |
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| T |
1217817 |
gatttttacatcatcttattggcctttcttaagccctcttagatatcaatgaataagactcaactacccttcaaat |
1217742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 1218124 - 1218071
Alignment:
| Q |
11 |
caaaggaaagaaaaaatggcaacatagtagctatgttgaaagccatgaatttgt |
64 |
Q |
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| T |
1218124 |
caaaggaaagaaaaaatggcaacatagtagctatgttgaaagccatgaatttgt |
1218071 |
T |
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