View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_high_27 (Length: 399)
Name: NF20706_high_27
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_high_27 |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: scaffold0457 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 7 - 382
Target Start/End: Complemental strand, 3804 - 3429
Alignment:
| Q |
7 |
tcgaagaatatgggcttgatgctcgtctataaccacgttcaaaacggtctccacacgggtttattagatgcaatcttgacgcgtcttttctgagcaacgc |
106 |
Q |
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| T |
3804 |
tcgaagaaaatgggcttgatgctcgtctataaccacgttcaaaatggtctccacacgggtttattagatgcaatcttgacgcgtcttttctgagcaacgc |
3705 |
T |
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| Q |
107 |
aatacaattggaattgggatttgcttaagggacgagtatgaaatgtttatgggagcaaagactttgcagttgcgatagattttgaatgttaatgagggtg |
206 |
Q |
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| T |
3704 |
aatacagttggaattgggatttgcttaagggacgagtatgaaatgtttatgggagcaaagactttgcagttgcgatatattttgaatgttaatgagggtg |
3605 |
T |
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| Q |
207 |
aggcttccgacttattagcagcaatcaagtggatgcgagaataagagttcaagcaaactatctttactttggatttgaagagtgttgtagaatctttgga |
306 |
Q |
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| T |
3604 |
aggcttccgacttattagcagcaatcaagtggatgcgagaataagagttcaagcaaactatctttactttggatttgaagagtgttgtagaatctttgga |
3505 |
T |
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| Q |
307 |
ctagtcaatcgatggtagaaccgaggtaggttctattttaagtaaatctcaaagtactttatcttaattttgtaag |
382 |
Q |
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| T |
3504 |
ctaatcaatcgatggtagaaccgaggtaggttctattttaagtaaatctcaaagtactttatcttaattttgtaag |
3429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 43804773 - 43804886
Alignment:
| Q |
113 |
attggaattgggatttgcttaagggacgagtatgaaatgtttatgggagcaaagactttgcagttgcgatagattttgaatgttaatgagggtgaggctt |
212 |
Q |
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| T |
43804773 |
attggaattgagatttgcttaagggacgcatatgaaatatttatgggag-aaaaactttgtgggtgcaacctatcttgaatgttaagga-ggtgaggctt |
43804870 |
T |
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| Q |
213 |
ccgacttattagcagc |
228 |
Q |
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| T |
43804871 |
ccgtcttattggcagc |
43804886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 28790245 - 28790286
Alignment:
| Q |
185 |
attttgaatgttaatgagggtgaggcttccgacttattagca |
226 |
Q |
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| T |
28790245 |
attttgaatgttaaagatggtgaggcttcagacttattagca |
28790286 |
T |
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