View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_high_31 (Length: 352)
Name: NF20706_high_31
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 100 - 336
Target Start/End: Original strand, 26606264 - 26606500
Alignment:
| Q |
100 |
gaaatgttccatgttaaatttcatgtctaccctagagaccatgatcatgttgaaaattctccatttcttccaatcatgacctttattgtcaaacctttgg |
199 |
Q |
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| T |
26606264 |
gaaatgttccatgttaaatttcatgtctaccctagagaccatgatcatgttgaaaattctccatttcttccaatcatgacctttattgtcaaacctttgg |
26606363 |
T |
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| Q |
200 |
gtgaagaaaagtcctgaaatcgcttgacctatcttcaaatgaaaaccaataatcagaaataagaagatggtagtactcggcaagatgtaagcaagaccaa |
299 |
Q |
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| T |
26606364 |
gtgaagaaaagtcctgaaatcgcttgacctatcttcaaatgaaaatcaatcatcagaaataagaagatggtagtactcgggaagatgtaagcaagaccaa |
26606463 |
T |
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| Q |
300 |
ggaacattgatccatcgcttacaatagaagtcgaaag |
336 |
Q |
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| T |
26606464 |
ggaacattgatccatcgcttacaatagaagtcgaaag |
26606500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 26606231 - 26606277
Alignment:
| Q |
40 |
tacatttacaaaccagtagccaaacatatcaaagaaatgttccatgt |
86 |
Q |
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| T |
26606231 |
tacacttacaaaccagtagccaaacatatcaaagaaatgttccatgt |
26606277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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