View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_high_36 (Length: 331)
Name: NF20706_high_36
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 1218139 - 1218274
Alignment:
| Q |
39 |
atcattgcaaatgggggttgtgaacttgaagagaagaagatgttcaaagtgcaaatgttgcaaaggaaccaccaatttggttcaaagggttgcatcctcc |
138 |
Q |
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| T |
1218139 |
atcattgcaaatgggggttgtgaacttgaacagaagaagatgttcaaagtgcaaatgttgcaaaggaaccaccaatttggttcaaagggttgcatcctcc |
1218238 |
T |
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| Q |
139 |
cagaatcaagtgagtttagctaagaaaaaaatgtga |
174 |
Q |
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| T |
1218239 |
cagaatcaagtgagtttagctaagaaaaaaatgtga |
1218274 |
T |
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Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 208 - 319
Target Start/End: Original strand, 1218308 - 1218419
Alignment:
| Q |
208 |
caaatttcacattggatctcttaatatttaatccaaagttctttcctttttattgttattagaatctaagaattgttttttccctttatagaaaacaccc |
307 |
Q |
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| T |
1218308 |
caaatttcacattggatctcttaatatttaatcaaaagttctttcctttttactgttattagaatctaagaattgttttttcccttcatagaaaacacca |
1218407 |
T |
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| Q |
308 |
atcattggtttc |
319 |
Q |
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| T |
1218408 |
atcattggtttc |
1218419 |
T |
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