View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_high_37 (Length: 331)
Name: NF20706_high_37
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 1763962 - 1764264
Alignment:
| Q |
20 |
tcaacctttacattcatatggtttgaagaataattcacaattgtacaattaaaggatttctaccaaaataaataaagaaatattgccgcctctaccttat |
119 |
Q |
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| T |
1763962 |
tcaacctttacattcatatggtttgaagaataattcacaattgtacaattaaaggatttctaccaaaataaataaagaaatattgccgcctctaccttat |
1764061 |
T |
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| Q |
120 |
ctatatatggagcaaaacaataatcatagcacatcaaatatgaaaattcctcgattttatttagatggactaatgtctcactnnnnnnntagcattcaaa |
219 |
Q |
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| T |
1764062 |
ctatatatggagcaaaacaataatcatagcacatcaaatatgaaaattcctcgattttatttagatggactaatgtctcactaaaaaaatagcattcaaa |
1764161 |
T |
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| Q |
220 |
ttataatacaaaatgaaaaacttaaattttggaattacgcttgggtttgggttttcccaacccagaattttaactaatcaaactagtatttttagagaat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1764162 |
ttataatacaaaatgaaaaacttaaattttggaattacgcttgggtttgggttttcccaacccagaattttaactaatcaaactagtatttttagagaat |
1764261 |
T |
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| Q |
320 |
tat |
322 |
Q |
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||| |
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| T |
1764262 |
tat |
1764264 |
T |
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