View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_high_40 (Length: 321)
Name: NF20706_high_40
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 31009854 - 31010159
Alignment:
| Q |
1 |
ttttgaaggaataggaatggttttgcctttggaatcagaagcaaaagataaagataaatttggtggagttttgggtttgggaatgtttctaatttttctg |
100 |
Q |
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| T |
31009854 |
ttttgaaggaataggaatggttttgcctttggaatcagaagcaaaagataaagataaatttggtggagttttgggtttgggaatgttcctaatttttcta |
31009953 |
T |
|
| Q |
101 |
ttgtatggaggttttgctactttaggttactttgcttttggtgaagcaactcaagggattattactacaaatctagggcaaggaatgattactgctttgg |
200 |
Q |
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| T |
31009954 |
ttgtatggaggttttgctactttaggttactttgcttttggtgaagcaactcaagggattattactacaaatctagggcaaggaatgattactgctttgg |
31010053 |
T |
|
| Q |
201 |
ttcaattaggtctttgtgtcaatctctttttcacctttcctttgatgatgaatcctgtttatgaaattgttgagagaagattttgtaaatctaagtattg |
300 |
Q |
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| T |
31010054 |
tacaattaggtctttgtgtcaatctctttttcacctttcctttgatgatgaatcctgtttatgaaattgttgagagaagattttgtaaatctaagtattg |
31010153 |
T |
|
| Q |
301 |
tttgtg |
306 |
Q |
| |
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|||||| |
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| T |
31010154 |
tttgtg |
31010159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 303
Target Start/End: Complemental strand, 9782707 - 9782525
Alignment:
| Q |
121 |
tttaggttactttgcttttggtgaagcaactcaagggattattactacaaatctagggcaaggaatgattactgctttggttcaattaggtctttgtgtc |
220 |
Q |
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||||||||| |||||||||||||||| |||| | | |||||||||| ||| |||| ||||| |||| || | ||||||||||||| || ||| | |
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| T |
9782707 |
tttaggttattttgcttttggtgaagaaactaaggatattattactaataatttaggtcaaggtgtgataggtgttatggttcaattagggctatgtatt |
9782608 |
T |
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| Q |
221 |
aatctctttttcacctttcctttgatgatgaatcctgtttatgaaattgttgagagaagattttgtaaatctaagtattgttt |
303 |
Q |
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||| | ||| | || ||||||||||||||||||||||||||||| || |||||||||| |||||| | |||| ||||||||| |
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| T |
9782607 |
aatttgtttattacatttcctttgatgatgaatcctgtttatgaggtttttgagagaaggttttgtgattctaggtattgttt |
9782525 |
T |
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