View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20706_high_42 (Length: 319)
Name: NF20706_high_42
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_high_42 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 319
Target Start/End: Complemental strand, 31980904 - 31980600
Alignment:
| Q |
15 |
agaagcaactcatgcaagatgttccaatttgatttcacatccatcaactccggtcgcgcctccaccatctcttgcatcgatcttctaaaatccatataag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31980904 |
agaagcaactcatgcaagatgttccaatttgatttcacatccatcaactccggtcgcgcctccaccatctcttgcatcgatcttctaaaatccatataag |
31980805 |
T |
|
| Q |
115 |
gatcgggcgagtaggttggtactgccacacttccgttgaacaaaacctcctctttctctttctcttgtttcttctcacgctcagtactattggacttatc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31980804 |
gatcgggcgagtaggttggtactgccacacttccattgaacaaaacctcctctttctctttctcttgtttcttctcacgcttagtactattggacttatc |
31980705 |
T |
|
| Q |
215 |
catcggtggtaccgaagaatgttgaatgcaatttgtgtttgtatattcaattaatgagttagagctaccgggggaggagaagaagaagcgttgagaggcg |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31980704 |
catcagtggtaccgaagaatgttgaatgcaatctgtgtttgtatattcaattaatgagttagagctaccgggggaggagaagaagaagcgttgagaggcg |
31980605 |
T |
|
| Q |
315 |
aaggc |
319 |
Q |
| |
|
||||| |
|
|
| T |
31980604 |
aaggc |
31980600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 38042383 - 38042481
Alignment:
| Q |
56 |
catcaactccggtcgcgcctccaccatctcttgcatcgatcttctaaaatccatataaggatcgggcgagtaggttggtactgccacacttccgttgaa |
154 |
Q |
| |
|
||||||||| ||| |||| ||||||||||||||||| || |||| ||||||||| ||||| || || || || ||||| || ||||||||||||||||| |
|
|
| T |
38042383 |
catcaactctggttgcgcttccaccatctcttgcattgaccttcgaaaatccatgtaagggtccggtgaatatgttggcaccgccacacttccgttgaa |
38042481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University