View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_high_43 (Length: 311)
Name: NF20706_high_43
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 34260489 - 34260204
Alignment:
| Q |
19 |
aattattacaactcttggccaaaatgaaactacataatttattgatagtccactccatccctaatcttaacgagattgataagtaacaatgttaaatttg |
118 |
Q |
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| T |
34260489 |
aattattacaactcttggccaaaatgaaactacataatttattgatagtccactccatccctaatcttaacgagattgataagtaacaatgttaaattta |
34260390 |
T |
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| Q |
119 |
ttcaactttggccatcaaaattgtgaaaagattgcagttaaacttccacatattcttgctataagatcttaaattgcttcaaccacaataaccagatata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34260389 |
ttcaactttggccatcaaaattgtgaaaagattgcagttaaacttccacatattcttgctttaagatcttaaattgcttcaaccacaataaccagatata |
34260290 |
T |
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| Q |
219 |
cacataccattcttccacactttagccgaatagcattaggcatttatcatatagaacttaccttgactttcttgaagatatctctg |
304 |
Q |
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| T |
34260289 |
cacataccattcttccacactttagccgaatagcattaggcatttatcatatagaacttaccttgactttcttgaagatatctctg |
34260204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 34250553 - 34250343
Alignment:
| Q |
19 |
aattattacaactcttggccaaaatgaaactacataatttattgatagtccactccatccctaatcttaacgagattgataagtaacaatgttaaatttg |
118 |
Q |
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|||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| || ||||| |||||||| | | ||||||| |
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| T |
34250553 |
aattattataaatcttggccaaaatgaaactgcatgatttattgatagtccactccatcccctatcttaatgacattgaaaagtaacagtataaaatttg |
34250454 |
T |
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| Q |
119 |
ttcaactttggccatcaaaattgtgaaaagattgcagttaaacttccacatattcttgctataagatcttaaattgcttcaaccacaataaccagatata |
218 |
Q |
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| T |
34250453 |
ttcaacttttgcca----aatcatgaaaagaatgcatttgaa-ttccccatattctttctgcaagatgttaaattgtttcaacctcaataaccagatatg |
34250359 |
T |
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| Q |
219 |
cacataccattcttcc |
234 |
Q |
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||||||| |||||||| |
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| T |
34250358 |
cacatacaattcttcc |
34250343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 304
Target Start/End: Complemental strand, 34250283 - 34250254
Alignment:
| Q |
275 |
cttaccttgactttcttgaagatatctctg |
304 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34250283 |
cttaccttgactttcttgaagatatctctg |
34250254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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