View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20706_high_58 (Length: 251)

Name: NF20706_high_58
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20706_high_58
NF20706_high_58
[»] chr4 (9 HSPs)
chr4 (58-248)||(19555733-19555923)
chr4 (85-251)||(22223177-22223344)
chr4 (62-139)||(21588704-21588781)
chr4 (18-58)||(19554465-19554505)
chr4 (191-241)||(16939534-16939584)
chr4 (205-241)||(3105959-3105995)
chr4 (205-241)||(16853039-16853075)
chr4 (205-241)||(16939564-16939600)
chr4 (205-241)||(55731381-55731417)
[»] chr2 (3 HSPs)
chr2 (58-251)||(19564138-19564332)
chr2 (58-147)||(22312190-22312279)
chr2 (191-227)||(22763330-22763366)
[»] chr1 (8 HSPs)
chr1 (56-180)||(37283745-37283868)
chr1 (191-251)||(12669581-12669641)
chr1 (201-241)||(25449057-25449097)
chr1 (223-251)||(12669643-12669671)
chr1 (191-227)||(18382444-18382480)
chr1 (205-241)||(21135665-21135701)
chr1 (191-227)||(46181391-46181427)
chr1 (205-241)||(48570734-48570770)
[»] chr3 (9 HSPs)
chr3 (191-251)||(8710394-8710454)
chr3 (191-251)||(9062281-9062341)
chr3 (191-251)||(11074069-11074129)
chr3 (186-246)||(10917840-10917900)
chr3 (191-251)||(11074009-11074069)
chr3 (187-251)||(10923065-10923129)
chr3 (205-241)||(21606238-21606274)
chr3 (205-241)||(49669073-49669109)
chr3 (205-241)||(50299773-50299809)
[»] chr7 (3 HSPs)
chr7 (58-251)||(22974771-22974964)
chr7 (205-241)||(12174925-12174961)
chr7 (205-241)||(14426084-14426120)
[»] chr8 (5 HSPs)
chr8 (205-248)||(14990644-14990687)
chr8 (205-248)||(18152229-18152272)
chr8 (191-241)||(21540460-21540510)
chr8 (191-225)||(28888788-28888822)
chr8 (205-241)||(33560797-33560833)
[»] scaffold0908 (1 HSPs)
scaffold0908 (191-241)||(4445-4495)
[»] chr6 (5 HSPs)
chr6 (191-249)||(10820688-10820746)
chr6 (191-227)||(7751742-7751778)
chr6 (191-227)||(27384087-27384123)
chr6 (191-227)||(27474471-27474507)
chr6 (191-227)||(27503969-27504005)
[»] chr5 (9 HSPs)
chr5 (190-251)||(24494982-24495043)
chr5 (193-241)||(4886500-4886548)
chr5 (205-241)||(10848309-10848345)
chr5 (205-241)||(11993427-11993463)
chr5 (205-241)||(29138969-29139005)
chr5 (205-241)||(30742519-30742555)
chr5 (205-241)||(33932805-33932841)
chr5 (191-227)||(36229355-36229391)
chr5 (205-241)||(42243218-42243254)
[»] scaffold1359 (1 HSPs)
scaffold1359 (205-241)||(1189-1225)
[»] scaffold0352 (1 HSPs)
scaffold0352 (205-241)||(1355-1391)
[»] scaffold0349 (1 HSPs)
scaffold0349 (191-227)||(14028-14064)
[»] scaffold0116 (1 HSPs)
scaffold0116 (205-241)||(2508-2544)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 58 - 248
Target Start/End: Original strand, 19555733 - 19555923
Alignment:
Q  58 tttatatttgttgtaagcaaataatagtctcttgcttgttaagcttgagcaccataaatctcttggtgaaaccttgagcacctgaagtctttggcagttg 157  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  19555733 tttataattgttgtaagcaaataatagtctcttgcttgttaagcttgagcaccataaatctcttggtgaaactttgagcaccggaagtctctggcagttg 19555832  T
Q  158 tggttgagcatagaagtctcttacaagagccctttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgt 248  Q
    || ||||| ||||||||||||||  | ||||||||||||||||||||| |||||| || ||||||||| |||| |||||||||||||||||    
T  19555833 tgattgagtatagaagtctcttaggacagccctttgagcattggaaatatcttgcctgcgtgcttgaggaatagaagtctcttggagttgt 19555923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 85 - 251
Target Start/End: Original strand, 22223177 - 22223344
Alignment:
Q  85 tctcttgcttgttaagcttgagcaccataaatctcttggtgaaaccttgagcacctgaagtctttggcagttgtggttgagca-tagaagtctcttacaa 183  Q
    |||||||||||| ||||||||||| ||||| | |||||||||||| ||||||||| |||||||| | |||||||| ||||||| |||||||||||||       
T  22223177 tctcttgcttgtgaagcttgagcatcataagtttcttggtgaaactttgagcaccagaagtcttagtcagttgtgattgagcactagaagtctcttaggg 22223276  T
Q  184 gagccctttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtcct 251  Q
      |||||| ||||||| ||| ||| || | || |  ||||||||||| ||||||||||||||||||||    
T  22223277 ttgcccttagagcattagaagtctttttcctgcgctcttgagcaatagaagtctcttggagttgtcct 22223344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 21588704 - 21588781
Alignment:
Q  62 tatttgttgtaagcaaataatagtctcttgcttgttaagcttgagcaccataaatctcttggtgaaaccttgagcacc 139  Q
    |||||||||||| |||| |  |||||||||||||| |||||||||||  |||||||||||| ||||||||||||||||    
T  21588704 tatttgttgtaaacaaacataagtctcttgcttgtgaagcttgagcaatataaatctcttgttgaaaccttgagcacc 21588781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 19554465 - 19554505
Alignment:
Q  18 gcttcaatgtctgccacggttctttggagtgattctaaatt 58  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  19554465 gcttcaatgtctgccacggttctttggagggattctaaatt 19554505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 16939584 - 16939534
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    ||||||| | ||| |||||||||| ||||||||||||||| ||||||||||    
T  16939584 ttgagcaatagaagtctcttgcatttgtgcttgagcaatagaagtctcttg 16939534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 3105959 - 3105995
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  3105959 tctcttgcatttgtgcttgagcaatagaagtctcttg 3105995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 16853075 - 16853039
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  16853075 tctcttgcatttgtgcttgagcaatagaagtctcttg 16853039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 16939600 - 16939564
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  16939600 tctcttgcatttgtgcttgagcaatagaagtctcttg 16939564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 55731417 - 55731381
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  55731417 tctcttgcatttgtgcttgagcaatagaagtctcttg 55731381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 251
Target Start/End: Complemental strand, 19564332 - 19564138
Alignment:
Q  58 tttatatttgttgtaagcaaataatagtctcttgcttgttaagcttgagcaccataaatctcttggtgaaaccttgagcacctgaagtctttggcagttg 157  Q
    |||||||||||||||| |||| |  |||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||  |||||||    ||||||    
T  19564332 tttatatttgttgtaaacaaacagaagtctcttgcttgtgaagcttgagcaacataagtctcttggtgaaatcttgagcactagaagtctcaatcagttg 19564233  T
Q  158 tggttgagca-tagaagtctcttacaagagccctttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtcct 251  Q
    || ||||||| |||||||||||||      | ||||||||||||||| |||||| ||||  ||||| ||||||| |||||||||| |||||||||    
T  19564232 tgattgagcactagaagtctcttagggttactctttgagcattggaagtctctttcatgcatgcttaagcaatagaagtctcttgtagttgtcct 19564138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 22312190 - 22312279
Alignment:
Q  58 tttatatttgttgtaagcaaataatagtctcttgcttgttaagcttgagcaccataaatctcttggtgaaaccttgagcacctgaagtct 147  Q
    |||||||| ||||||| ||||||  |||||||| ||||| ||||||||||| || || |||||||| |||| |||||||||  |||||||    
T  22312190 tttatattcgttgtaaacaaatacaagtctctttcttgtgaagcttgagcatcagaagtctcttggcgaaaacttgagcactcgaagtct 22312279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 22763366 - 22763330
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagca 227  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  22763366 ttgagcattggaagtctcttgcctgtgtgcttgagca 22763330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 37283745 - 37283868
Alignment:
Q  56 attttatatttgttgtaagcaaataatagtctcttgcttgttaagcttgagcaccataaatctcttggtgaaaccttgagcacctgaagtctttggcagt 155  Q
    |||||||||||| ||||| |||| |  ||| |||||||||| ||||||||||| ||||| |||||||||||||| ||||||| |  ||||||    ||||    
T  37283745 attttatatttgctgtaaacaaacataagtatcttgcttgtgaagcttgagcatcataagtctcttggtgaaactttgagcatc-aaagtctcaatcagt 37283843  T
Q  156 tgtggttgagcatagaagtctctta 180  Q
    || | ||||||||||||||||||||    
T  37283844 tgcgattgagcatagaagtctctta 37283868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 12669581 - 12669641
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtcct 251  Q
    |||||||||| || || ||||| ||||||||||||||||| ||||||||||||||||||||    
T  12669581 ttgagcattgaaagtcgcttgcctgtgtgcttgagcaatagaagtctcttggagttgtcct 12669641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 25449057 - 25449097
Alignment:
Q  201 gaaatctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||||||| ||||||||||||||| ||||||||||    
T  25449057 gaaatctcttgcatttgtgcttgagcaatagaagtctcttg 25449097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 251
Target Start/End: Original strand, 12669643 - 12669671
Alignment:
Q  223 gagcaataaaagtctcttggagttgtcct 251  Q
    |||||||||||||||||||||||||||||    
T  12669643 gagcaataaaagtctcttggagttgtcct 12669671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 18382444 - 18382480
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagca 227  Q
    |||||||||||||  ||||||||||||||||||||||    
T  18382444 ttgagcattggaagactcttgcatgtgtgcttgagca 18382480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 21135665 - 21135701
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||  ||||||||||||||||||||||||||    
T  21135665 tctcttgcagttgtgcttgagcaataaaagtctcttg 21135701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 46181391 - 46181427
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagca 227  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  46181391 ttgagcattggaagtctcttgcatgcgtgcttgagca 46181427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 48570734 - 48570770
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||  ||||||||||||||||||||||||||    
T  48570734 tctcttgcagttgtgcttgagcaataaaagtctcttg 48570770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 8710454 - 8710394
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtcct 251  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||| |||| ||||    
T  8710454 ttgagcattggaagtctcttgcctgtgtgcttgagcaatagaagtctcttgaagttatcct 8710394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 9062341 - 9062281
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtcct 251  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||| |||| ||||    
T  9062341 ttgagcattggaagtctcttgcctgtgtgcttgagcaatagaagtctcttgaagttatcct 9062281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 11074129 - 11074069
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtcct 251  Q
    ||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||| ||||    
T  11074129 ttgagcattggatgtctcttgcctgtgtgcttgagcaatataagtctcttggagttatcct 11074069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 10917900 - 10917840
Alignment:
Q  186 gccctttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagtt 246  Q
    |||||||||| ||||||| | |||||| ||||||||||||||||| ||||||| |||||||    
T  10917900 gccctttgagaattggaagtttcttgcttgtgtgcttgagcaatagaagtctcctggagtt 10917840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 11074069 - 11074009
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtcct 251  Q
    |||| ||||| || |||||||| || |||||||||||||| ||||||||||||||||||||    
T  11074069 ttgatcattgtaagtctcttgcctgcgtgcttgagcaatagaagtctcttggagttgtcct 11074009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 10923129 - 10923065
Alignment:
Q  187 ccctttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtcct 251  Q
    |||||||||  |||||| |||||| | ||  ||||||| ||||| ||||||||||||||||||||    
T  10923129 ccctttgagagttggaagtctcttacttgcatgcttgaacaatagaagtctcttggagttgtcct 10923065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 21606238 - 21606274
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  21606238 tctcttgcatttgtgcttgagcaatagaagtctcttg 21606274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 49669073 - 49669109
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||  ||||||||||||||||||||||||||    
T  49669073 tctcttgcagttgtgcttgagcaataaaagtctcttg 49669109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 50299809 - 50299773
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  50299809 tctcttgcatttgtgcttgagcaatataagtctcttg 50299773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 251
Target Start/End: Complemental strand, 22974964 - 22974771
Alignment:
Q  58 tttatatttgttgtaagcaaataatagtctcttgcttgttaagcttgagcaccataaatctcttggtgaaaccttgagcacctgaagtctttggcagttg 157  Q
    |||||||||  ||||| ||| ||  |||||||| ||||| ||||||||||| ||||| |||||||| ||| |||||||| ||  |||||| |   | |||    
T  22974964 tttatattttctgtaaacaagtagaagtctctttcttgtgaagcttgagcatcataagtctcttggagaatccttgagcgccataagtctctttaaattg 22974865  T
Q  158 tggttgagca-tagaagtctcttacaagagccctttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtcct 251  Q
    |  || | || ||||||||||||   | ||||||| ||||||||| | |||||||| |||||| | ||||||||||| |||||||||||| ||||    
T  22974864 taattaaacaatagaagtctcttggcatagccctt-gagcattggtagtctcttgcctgtgtgttggagcaataaaaatctcttggagttttcct 22974771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 12174925 - 12174961
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  12174925 tctcttgcatttgtgcttgagcaatagaagtctcttg 12174961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 14426120 - 14426084
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||  ||||||||||||||||||||||||||    
T  14426120 tctcttgcagttgtgcttgagcaataaaagtctcttg 14426084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 14990644 - 14990687
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttggagttgt 248  Q
    |||||||||| ||||||||||||||| |||||||||| ||||||    
T  14990644 tctcttgcatttgtgcttgagcaatagaagtctcttgcagttgt 14990687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 18152229 - 18152272
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttggagttgt 248  Q
    |||||||||| ||||||||||||||| |||||||||| ||||||    
T  18152229 tctcttgcatttgtgcttgagcaatagaagtctcttgcagttgt 18152272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 21540510 - 21540460
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||| |||| ||||||||||||||||||||||||   ||||||||||    
T  21540510 ttgagcataggaagtctcttgcatgtgtgcttgagcaaaggaagtctcttg 21540460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 28888822 - 28888788
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgag 225  Q
    ||||||||||||| |||||||||||||||||||||    
T  28888822 ttgagcattggaagtctcttgcatgtgtgcttgag 28888788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 33560797 - 33560833
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  33560797 tctcttgcatttgtgcttgagcaatagaagtctcttg 33560833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0908 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0908
Description:

Target: scaffold0908; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 4445 - 4495
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||| ||||||||||||| |||||||||||||||   ||||||||||    
T  4445 ttgagcataggaaatctcttgcttgtgtgcttgagcaaaggaagtctcttg 4495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 10820746 - 10820688
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtc 249  Q
    |||||||||| |||| | |||| || ||||||||||| || ||||||||||||||||||    
T  10820746 ttgagcattgaaaatatattgcctgcgtgcttgagcattagaagtctcttggagttgtc 10820688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 7751742 - 7751778
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagca 227  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  7751742 ttgagcattggaagtctcttgcgtgtgtgcttgagca 7751778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 27384123 - 27384087
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagca 227  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  27384123 ttgagcattggaagtctcttgcgtgtgtgcttgagca 27384087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 27474507 - 27474471
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagca 227  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  27474507 ttgagcattggaagtctcttgcgtgtgtgcttgagca 27474471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 27504005 - 27503969
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagca 227  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  27504005 ttgagcattggaagtctcttgcgtgtgtgcttgagca 27503969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 24494982 - 24495043
Alignment:
Q  190 tttgagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttggagttgtcct 251  Q
    |||||||||  ||| |||||| ||  |||| ||||||||||||||||||||| |||||||||    
T  24494982 tttgagcatcagaagtctctttcaattgtgattgagcaataaaagtctcttgaagttgtcct 24495043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 4886548 - 4886500
Alignment:
Q  193 gagcattggaaatctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||| |||| |||||||||  ||||||||||||||| ||||||||||    
T  4886548 gagcataggaagtctcttgcagttgtgcttgagcaatagaagtctcttg 4886500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 10848345 - 10848309
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||  ||||||||||||||||||||||||||    
T  10848345 tctcttgcagttgtgcttgagcaataaaagtctcttg 10848309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 11993463 - 11993427
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||  ||||||||||||||||||||||||||    
T  11993463 tctcttgcagttgtgcttgagcaataaaagtctcttg 11993427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 29138969 - 29139005
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||  ||||||||||||||||||||||||||    
T  29138969 tctcttgcagttgtgcttgagcaataaaagtctcttg 29139005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 30742555 - 30742519
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  30742555 tctcttgcatttgtgcttgagcaatagaagtctcttg 30742519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 33932841 - 33932805
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  33932841 tctcttgcatttgtgcttgagcaatagaagtctcttg 33932805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 36229355 - 36229391
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagca 227  Q
    |||||||||||||  ||||||||||||||||||||||    
T  36229355 ttgagcattggaagactcttgcatgtgtgcttgagca 36229391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 42243254 - 42243218
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  42243254 tctcttgcatttgtgcttgagcaatagaagtctcttg 42243218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1359 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1359
Description:

Target: scaffold1359; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 1189 - 1225
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||  ||||||||||||||||||||||||||    
T  1189 tctcttgcagttgtgcttgagcaataaaagtctcttg 1225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 1355 - 1391
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||  ||||||||||||||||||||||||||    
T  1355 tctcttgcagttgtgcttgagcaataaaagtctcttg 1391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 14064 - 14028
Alignment:
Q  191 ttgagcattggaaatctcttgcatgtgtgcttgagca 227  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  14064 ttgagcattggaagtctcttgcctgtgtgcttgagca 14028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 2508 - 2544
Alignment:
Q  205 tctcttgcatgtgtgcttgagcaataaaagtctcttg 241  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  2508 tctcttgcatttgtgcttgagcaatagaagtctcttg 2544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University