View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_high_62 (Length: 246)
Name: NF20706_high_62
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_high_62 |
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Alignment Details
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 32782628 - 32782684
Alignment:
| Q |
159 |
gtaatgtgtcggcacatccttgcaaccatttaggaatactcacaagttgtggcaaag |
215 |
Q |
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| T |
32782628 |
gtaatgtatccgcacattcttgcaaccatttaggaatactcacaagttgtggcaaag |
32782684 |
T |
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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 19031125 - 19031069
Alignment:
| Q |
159 |
gtaatgtgtcggcacatccttgcaaccatttaggaatactcacaagttgtggcaaag |
215 |
Q |
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| T |
19031125 |
gtaatgtgtcgacagatccttgcaaccatttaggaatactcacaagttttggcaaag |
19031069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 49353640 - 49353585
Alignment:
| Q |
160 |
taatgtgtcggcacatccttgcaaccatttaggaatactcacaagttgtggcaaag |
215 |
Q |
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| T |
49353640 |
taatgtgtcggcacatcctttcaaccattcaggaaaactcacaagttgtggcaaag |
49353585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 49342217 - 49342162
Alignment:
| Q |
153 |
aggttagtaatgtgtcggcacatccttgcaaccatttaggaatactcacaagttgt |
208 |
Q |
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| T |
49342217 |
aggtttgtaatgtgtctgcacatccttgcaaccattgcggaaaactcacaagttgt |
49342162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 29752027 - 29751971
Alignment:
| Q |
159 |
gtaatgtgtcggcacatccttgcaaccatttaggaatactcacaagttgtggcaaag |
215 |
Q |
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|||||||||| ||||||||||||||||||| ||||| ||||| | ||||||||||| |
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| T |
29752027 |
gtaatgtgtccgcacatccttgcaaccattgaggaaaactcaacaattgtggcaaag |
29751971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 29601267 - 29601308
Alignment:
| Q |
159 |
gtaatgtgtcggcacatccttgcaaccatttaggaatactca |
200 |
Q |
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| T |
29601267 |
gtaatgtgtccgcacatccttgcaaccattgaggaaaactca |
29601308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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