View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_high_70 (Length: 235)
Name: NF20706_high_70
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_high_70 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 36759312 - 36759530
Alignment:
| Q |
3 |
taattatatatcacttttcccacaaaagaaaattctcttagaaaattatactaactttataagatgtagtaaaaagatattataatgggatttttcaata |
102 |
Q |
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| T |
36759312 |
taattatatatcacttttcctacaaaagaaaattctcttagaaaattatactaactttataagatgtagtaaaaagatattataatgggatttttcaata |
36759411 |
T |
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| Q |
103 |
ttttgtgtatnnnnnnnnnggtcatgtgaaccaataacagccctccctttacctatactattaaaaccttatatgatgttatggcatctttttgaaatgc |
202 |
Q |
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| T |
36759412 |
ttttgtgtataaaaaaaaaggtcatgtgaaccaacaacagccctccctttacctatactattaaaaccttaaatgatgttatggcatctgtttgaaatgt |
36759511 |
T |
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| Q |
203 |
gaaaataacttaatggaaa |
221 |
Q |
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| T |
36759512 |
gaaaataacttaatggaaa |
36759530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 36795558 - 36795635
Alignment:
| Q |
129 |
tgaaccaataacagccctccctttacctatactattaaaaccttatatgatgttatggcatctttttgaaatgcgaaaat |
208 |
Q |
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|||||||||||||||||||| |||| | ||| ||||||||| ||| ||| || ||||| |||||||||||| |||||| |
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| T |
36795558 |
tgaaccaataacagccctccttttagccataatattaaaacattacttga--ttgtggcacctttttgaaatgggaaaat |
36795635 |
T |
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