View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_high_9 (Length: 566)
Name: NF20706_high_9
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Complemental strand, 40330234 - 40329800
Alignment:
| Q |
18 |
aacttattggtattaaactccacttactgattaacattttctagctaacaattgctaatatttgttattgaaaaataatagggaaataaaactagaatca |
117 |
Q |
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| T |
40330234 |
aacttattggtattaaactccacttactaattaacattttctagctaacaattgctaatatttgttattgaaaaataatagggaaataaaactagaatca |
40330135 |
T |
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| Q |
118 |
agtatttgcagcagttatgataatgaatccatcatgagcccatatcaggacttattaatcatattagaacataaatattgatataagtagctaacatata |
217 |
Q |
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| T |
40330134 |
agtatttgcagcagttatgataatgaatccatcattagcctatatcagggcttattaatcatattagaacataaatattgatataagtagctaacatata |
40330035 |
T |
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| Q |
218 |
tcatcatcaatacatacaatacatagattacaacttaccagaagaaaattgagttccttattttcatcctccaagatttttccctgagtaatatcaaagg |
317 |
Q |
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| T |
40330034 |
tcatcatcaatacatacaatacatagattaccacttaccagaagaaaattgagttccttattttcatcctccaagatttttccctgagtaatatcaaagg |
40329935 |
T |
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| Q |
318 |
aatcacatgagttaattaagcnnnnnnnnnnnnggaattacatgagcattttcatgttaaaagagtaattagatgagttagcatcccttttgattacttt |
417 |
Q |
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| T |
40329934 |
aatcacatgag----ttaagcaaaaataaaaaaggaattacatgagcattttcatgttaaaagagtaattagatgagttagcatcccttttgattacttt |
40329839 |
T |
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| Q |
418 |
tcaagggatttatgttttgttagacatataattactgcc |
456 |
Q |
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| T |
40329838 |
tcaagggatttatgttttgttagacatataattactgcc |
40329800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 557
Target Start/End: Complemental strand, 40329729 - 40329701
Alignment:
| Q |
529 |
tacatacatttctcttgaacatcctatgc |
557 |
Q |
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| T |
40329729 |
tacatacatttctcttgaacatcctatgc |
40329701 |
T |
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