View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_12 (Length: 476)
Name: NF20706_low_12
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Original strand, 45686556 - 45687013
Alignment:
| Q |
17 |
atagttgccatcaacaatccccactcagtatttataccaacactagttacctacagatggaagcataaaagtgtcaaggtataagaattgtaaaagaatt |
116 |
Q |
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| T |
45686556 |
atagttgccatcaacaatccccactcagtatttataccaacactagttacctacagatggaagcataaaagtgtcaaggtataagaattgtaaaagaatt |
45686655 |
T |
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| Q |
117 |
ttgtgcttgtgcttaaataccataaaaacataacaacaaagtctttttctgccaattaagagtaagtcacatgaatcaaatgacgcgatgatgccatgta |
216 |
Q |
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| T |
45686656 |
ttgtgcttgtgcttaaataccataaaaacataacaacaaagtctttttctgccaattaagagtaagtcacatgaatcaaatgacgcgatgatgccatgta |
45686755 |
T |
|
| Q |
217 |
gtaagtcatgtttaaagataaacttctaaagaaaatattagcattcatgcagctaaagaacaaaatgcgcggcaacaaactttataagtcagaaacctgt |
316 |
Q |
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| T |
45686756 |
gtaagtcatgtttaaagataaacttctaaagaaaatattagcattcatgcagctaaagaacaaaatgcgcggcaacaaactttataagtcagaaacctgt |
45686855 |
T |
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| Q |
317 |
tgcactatagttattcaaatactgaaaataatcatgcctttactcatcaaataacaagcagactagcagaaagaatataatttcatattataccagcata |
416 |
Q |
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| T |
45686856 |
tgcactatagttattcaaatactgaaaataatcatgcctttactcatcaaataacaagcagactagcagaaagaatataatttcatattataccagcata |
45686955 |
T |
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| Q |
417 |
gaaccaactccgtctgctactttgcagcctgacataaaaaatggtgctctgtgctcct |
474 |
Q |
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| T |
45686956 |
gaaccaactccgtctgctactttgcagcctgacataaaaaatggtgctttgtgatcct |
45687013 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 1440153 - 1440098
Alignment:
| Q |
21 |
ttgccatcaacaatccccactcagtatttataccaacactagttacctacagatgg |
76 |
Q |
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|||||||||| ||||||||||||||||| ||||||||| ||||||||||| |||| |
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| T |
1440153 |
ttgccatcaataatccccactcagtattaataccaacagcagttacctacatatgg |
1440098 |
T |
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