View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20706_low_13 (Length: 463)
Name: NF20706_low_13
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 4 - 444
Target Start/End: Complemental strand, 43255951 - 43255511
Alignment:
| Q |
4 |
cacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255951 |
cacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
43255852 |
T |
|
| Q |
104 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgtt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
43255851 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaaggttagcaatgtt |
43255752 |
T |
|
| Q |
204 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255751 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
43255652 |
T |
|
| Q |
304 |
accagtctcaagttccactaaatgaatgtattatatatatgctcttttcttttctttgctcttgttggttgctgtaagttataattattaccnnnnnnnc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
43255651 |
accagtctcaagttccactaaatgaatgtattatatatatgctcctttattttctttgctcttgttggttgttgtaagttataattattaccaaaaaaac |
43255552 |
T |
|
| Q |
404 |
tcaaccaccttttcttcactttcttgtcttggcatcctgtg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43255551 |
tcaaccaccttttcttcactttcttgtcttagcatcctgtg |
43255511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 4 - 444
Target Start/End: Complemental strand, 43259217 - 43258777
Alignment:
| Q |
4 |
cacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
103 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43259217 |
cacagaagattccaagattggtacaatcctggctccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
43259118 |
T |
|
| Q |
104 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgtt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
43259117 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaggaattaaagctgaaggaagttaagaatggaaggttagcaatgtt |
43259018 |
T |
|
| Q |
204 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43259017 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
43258918 |
T |
|
| Q |
304 |
accagtctcaagttccactaaatgaatgtattatatatatgctcttttcttttctttgctcttgttggttgctgtaagttataattattaccnnnnnnnc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
43258917 |
accagtctcaagttccactaaatgaatgtattatatatatgctcctttattttctttgctcttgttggttgttgtaagttataattattaccaaaaaaac |
43258818 |
T |
|
| Q |
404 |
tcaaccaccttttcttcactttcttgtcttggcatcctgtg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
43258817 |
tcaaccaccttttcttcactttcttgtcttagcatcttgtg |
43258777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 40 - 343
Target Start/End: Complemental strand, 43247918 - 43247615
Alignment:
| Q |
40 |
atgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
139 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43247918 |
atgggaaaacaatactttttaggacttgagaaaggtcttggcggttccggtgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
43247819 |
T |
|
| Q |
140 |
aagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgttggcaatattgggttactttattcaagctcttgttac |
239 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
43247818 |
aagatgagaaatcattgaaggatttaaagctgaaggaagttaagaatggaaggttagctatgttggcaatattgggttactttgttcaagctctagttac |
43247719 |
T |
|
| Q |
240 |
aggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatat |
339 |
Q |
| |
|
| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43247718 |
aagagttggaccataccaaaacttcttaaatcatttggctgacccttcaaacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatat |
43247619 |
T |
|
| Q |
340 |
atat |
343 |
Q |
| |
|
|||| |
|
|
| T |
43247618 |
atat |
43247615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 207 - 302
Target Start/End: Complemental strand, 43234059 - 43233964
Alignment:
| Q |
207 |
aatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatctt |
302 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
43234059 |
aatactgggtgactttgttcaatctcttgttacaggagttggaccataccaaaacctcttggatcatttggctgaccctttcaacaacaacatctt |
43233964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 43254144 - 43254090
Alignment:
| Q |
289 |
aacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatatatat |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43254144 |
aacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatatatat |
43254090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University