View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_14 (Length: 463)
Name: NF20706_low_14
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 54847678 - 54848150
Alignment:
| Q |
1 |
attgcatatatttttatt---catctgaaattagtagtctcttgaatgattgagagtaagtgtagacaaggatgcggtgataacatacaactcttttacc |
97 |
Q |
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| T |
54847678 |
attgcatatatttttattattcatctgaaattagtagtctcttgaatgattgagagaaagtgtagacaaggatgcggtgataacatacaactcttttacc |
54847777 |
T |
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| Q |
98 |
----------------atatttaattattgaatctaaatccaatccaatccaatcattttcttaagtaacggaatgtgcctctcataccataattttata |
181 |
Q |
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| T |
54847778 |
tataaacaccattcccatatttaattattgaatctaaatccaatccaatccaatcattttcttaagtaacg-aatgtgcctctcataccataattttata |
54847876 |
T |
|
| Q |
182 |
tttagttgattcaccagcttcccatatataatcaacagtaaagaaactcaatatcacaaattcataatcaacattttttaacaattgtattttataattt |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54847877 |
tttagttgattcaccagcttcccatatataatcaacagtaaagaaactcaatatcacaaattcataatcaacatttt-taacaattgtattttataattt |
54847975 |
T |
|
| Q |
282 |
ttctcttaagctgaacaaatggaacaagaaatcgaaaacatgatattcaacatgagttcacttggaacaagtttctcacaaaagtaagagcatttaattg |
381 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54847976 |
ttctcttaagctgaacaaatggaagaagaaatcgaaaacatgatattcaacatgagttcacttggaacaagtttctcacaaaagtaagagcatttaattg |
54848075 |
T |
|
| Q |
382 |
tttgt------------ttaattaattttgcttgattaaattttgtgttatatgtatgagcaggagaggaggatt |
444 |
Q |
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| T |
54848076 |
tttgtttaattaattaattaattaattttgcttgattaaattttgtgttatatgtatgagcaggagaggaggatt |
54848150 |
T |
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