View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20706_low_17 (Length: 449)

Name: NF20706_low_17
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20706_low_17
NF20706_low_17
[»] chr1 (2 HSPs)
chr1 (11-449)||(39389473-39389911)
chr1 (417-449)||(39389965-39389997)


Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 449
Target Start/End: Original strand, 39389473 - 39389911
Alignment:
Q  11 cacagaagtggtttccacaatctcttttcaagaggaaattgtgttatccgatgattccaattcggaaagtgctgcgtcatcacatgatagcagaattgat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39389473 cacagaagtggtttccacaatctcttttcaagaggaaattgtgctatccgatgattccaattcggaaagtgctgcgtcatcacatgatagcagaattgat 39389572  T
Q  111 gaagaatgtttggcttcattaggagcagaaaaagttgaagataatgtggtttcagatattgttgaagaaaaatattgttcatccgaaacaatactaaatg 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39389573 gaagaatgtttggcatcattaggagcagaaaaagttgaagataatgtggtttcagatattgttgaagaaaaatattgttcatccgaaacaatactaaatg 39389672  T
Q  211 gagcggaaattggtattcggaatgaagaacatgtagaagccgaaacagaaactgaagtcaccaatgatggtgtgaatgttgaacctgaaataaattctga 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  39389673 gagcggaaattggtattcggaatgaagaacatgtagaagccgaaacagaaactgaagtcaccaatgatggtgtgaatgttaaacctgaaataacttctga 39389772  T
Q  311 tgaaaaaggaaaatcatccatggaggtgaatgatcaacatcaactgatatcggtatcagactcatttcagttgacaactttgcttatgttgttaccaggg 410  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39389773 tgaaaaaggaaaatcatccatggaggtgaatgatcaacatcaaccgatatcggtatcagactcatttcagttgacaactttgcttatgttgttaccaggg 39389872  T
Q  411 ttgatcttgcttctagttctacttttgcttatgtatctt 449  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39389873 ttgatcttgcttctagttctacttttgcttatgtatctt 39389911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 39389965 - 39389997
Alignment:
Q  417 ttgcttctagttctacttttgcttatgtatctt 449  Q
    |||||||| ||||||||||||||||||||||||    
T  39389965 ttgcttcttgttctacttttgcttatgtatctt 39389997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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