View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_2 (Length: 770)
Name: NF20706_low_2
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 20 - 754
Target Start/End: Original strand, 32320252 - 32320996
Alignment:
| Q |
20 |
agatgaactccatgaaggttgaatcgattcgatgatccttctatctaattttgagtcgatttaaaactaactataaactctttgacttgagttaattgat |
119 |
Q |
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||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |
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| T |
32320252 |
agatgaacttcatgaaggttgaatcgattcgatggtctttctatctaattttgagtcaatttaa---taactataaactctttgacttgagtgaattgat |
32320348 |
T |
|
| Q |
120 |
ttagagagtcagttataacttttgaatcgattcaagtttacaaaaagacacataagacccaagaccataccaaaaagaatttccacaaaaaataagcttt |
219 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32320349 |
ttagagagtcagttatgacttttgaatcgattcaagtttacacaaagacacataagacccaagaccataccaaaaagaatttccataaaaaataagcttt |
32320448 |
T |
|
| Q |
220 |
gagatatgaattttagcgaagaatttatgtatacaaaatatgtttatgaaagtgagaatcaatcatagattaaaggggaatattacaatctaaaactacc |
319 |
Q |
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| T |
32320449 |
tagatatgaattttagcgaagagtttatgtatacaaaatatatttatgaaagtgagaatcaatcatagattagaggggaatattacaatctaaaactacc |
32320548 |
T |
|
| Q |
320 |
ataggaatataagata---------acctaagataagctagagaagcaaagaagacctacaatcttggccttctaataggaggaaatcttcgtcaattaa |
410 |
Q |
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||| |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32320549 |
atatgaatataagacatcactcaaaacctaagataagatagagaagcaaagaagacctacaatcttggccttctaataggaggaaatcttcgtcaattaa |
32320648 |
T |
|
| Q |
411 |
ggttttgctgccatttgcttgactgtatcaaaaagaagttatcacggtgtaagagtagaaatacttcttagggtggtagttgggttcttctgaaaaaatt |
510 |
Q |
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| T |
32320649 |
ggttttgctgccatttgcttgactgtatcaaaaagaagttatcacggtgtaagagtagaaatacttcttagggtggtagttgggtttttttgaaaaaatt |
32320748 |
T |
|
| Q |
511 |
tcttgtttttgttaccggtttaatttatttccatcttcaagactcatacaaatataatttcttttattgaatctttatctaaatattttttatagggtgg |
610 |
Q |
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| T |
32320749 |
tattgtttttgttaccggtttaatttatttccatcttcaaggctcatacaaatataatttcttttattgaatctttatttaaatattttttatagggtgg |
32320848 |
T |
|
| Q |
611 |
gagtgagaaagcttgaaaaatttgcggattatgtgtgattgaatgtgtcttgatcatgataatgatggttcatggggtttgttttgcctgagagtttaac |
710 |
Q |
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| T |
32320849 |
gagtgaggaagcttgaaaaatttgcggattatgtgtgattgaatgtgtcttgatcatgataatgatggttcatggggtttgttttgcctgagagtttaat |
32320948 |
T |
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| Q |
711 |
caacttatctct----attaagtgttgttggagattgcatgtgaatca |
754 |
Q |
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| T |
32320949 |
caacttatctcttttaagtaagtgttgttggagattgcatgtgaatca |
32320996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 1096172 - 1096081
Alignment:
| Q |
20 |
agatgaactccatgaaggttgaatcgattcgatgatccttctatctaattttgagtcgatttaaaactaactataaactctttgacttgagt |
111 |
Q |
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||||||||||||||||| || || ||||||||| | |||||||| | ||||||||||||| ||||||||||| ||||||| | |||||||| |
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| T |
1096172 |
agatgaactccatgaagattaaaatgattcgatgtttcttctatccagttttgagtcgattcaaaactaactagaaactctctaacttgagt |
1096081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 523 - 601
Target Start/End: Original strand, 14091495 - 14091573
Alignment:
| Q |
523 |
taccggtttaatttatttccatcttcaagactcatacaaatataatttcttttattgaatctttatctaaatatttttt |
601 |
Q |
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|||||||||| ||| ||||| |||||||| | | |||| ||||||||||| ||||||||||||| ||||| |||||| |
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| T |
14091495 |
taccggtttactttctttccttcttcaaggcccttacaggtataatttcttccattgaatctttatttaaatttttttt |
14091573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 214 - 317
Target Start/End: Complemental strand, 31245073 - 31244970
Alignment:
| Q |
214 |
agctttgagatatgaattttagcgaagaatttatgtatacaaaatatgtttatgaaagtgagaatcaatcatagattaaaggggaatattacaatctaaa |
313 |
Q |
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|||||||| |||||||| || | || | |||||| || ||||||||||||||| |||||||||| ||| ||||| || ||||| | ||||||||||||| |
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| T |
31245073 |
agctttgaaatatgaatgctatcaaatagtttatgcatgcaaaatatgtttatgcaagtgagaattaattatagactagaggggcacattacaatctaaa |
31244974 |
T |
|
| Q |
314 |
acta |
317 |
Q |
| |
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|||| |
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| T |
31244973 |
acta |
31244970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 19733486 - 19733396
Alignment:
| Q |
61 |
tatctaattttgagtcgatttaaaactaactataaactctttgacttgagttaattgatttagagagtcagttataacttttgaatcgatt |
151 |
Q |
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|||||| |||||| | |||| ||||| |||| ||||||| ||||||| || ||| ||||||| ||||||||||||||||||||| |||| |
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| T |
19733486 |
tatctagttttgaattgattcgaaactgactagaaactctctgacttgcgtaaataaatttagaaagtcagttataacttttgaattgatt |
19733396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 21715609 - 21715566
Alignment:
| Q |
21 |
gatgaactccatgaaggttgaatcgattcgatgatccttctatc |
64 |
Q |
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| T |
21715609 |
gatgaactgcatgaagattgaatcgatttgatgatccttctatc |
21715566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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