View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_20 (Length: 438)
Name: NF20706_low_20
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_20 |
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| [»] scaffold1333 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 6241524 - 6241223
Alignment:
| Q |
1 |
aaacaactttacaagtctcaagtatccacttacaagataactttgttctatagaagggtttcaaacgtattaaaccgcaaaagcgcgtcatcttttatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6241524 |
aaacaactttacaagtctcaagtatccacttacaagataactttgttcaatagaagggtttcaaacgtattaaaccgcaaaagcgcgtcatcttt-atat |
6241426 |
T |
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| Q |
101 |
gtaataaaaat------gagtctctaagatgtagacaaggaaataagatattgcaccgtttgacttatattccaccatttgagtttacacatatatacat |
194 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6241425 |
gtaataaaaataaaaatgagtctctaagatgtagacaaggaaataagatattgcaccgtttgacttgtattccaccatttgagtttacacatatatacat |
6241326 |
T |
|
| Q |
195 |
ggctaatattagggtagtcctacattgttaaacattttttatgatgtatacatacagtaattattagatatgatgtaaaatattttgtactgaaaaacat |
294 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6241325 |
ggctaatattagggtagtcctacattgtt--acat----------------atacagtaattattagatatgatgtaaaatattttgtactgaaaaacat |
6241244 |
T |
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| Q |
295 |
aagatatgatttaaaatagag |
315 |
Q |
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||||||||||||||||||||| |
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| T |
6241243 |
aagatatgatttaaaatagag |
6241223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 6212597 - 6212301
Alignment:
| Q |
1 |
aaacaactttacaagtctcaagtatccacttacaagataactttgttctatagaagggtttcaaacgtattaaaccgcaaaagcgcgtcatcttttatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6212597 |
aaacaactttacaagtctcaagtatccacttacaagataactttgttctatagaagggtttaaaacgtattaaaccgcaaaagcgcgtcatcttttatat |
6212498 |
T |
|
| Q |
101 |
gtaataaaaatgagtctctaag--atgtagacaaggaaataagatattgcaccgtttgact----tatattccaccatttgagtttacacatatatacat |
194 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
6212497 |
gtaataaaaatgagtctctaagatatgtagacaaggaaataagatattgcaccgtttgacttatatatattccaccatttgag-ttacacatatatacat |
6212399 |
T |
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| Q |
195 |
ggctaatattagggtagtcctacattgttaaacattttttatgatgtatacatacagtaattattagatatgatgtaaaatattttgtactgaaaaacat |
294 |
Q |
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| T |
6212398 |
ggctaatattagggtagtcctacattgtt--acat----------------atacagtaattattagatatgatgtaaaatattttgtaatgaaaaacat |
6212317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1333 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold1333
Description:
Target: scaffold1333; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 148 - 94
Alignment:
| Q |
174 |
tgagtttacacatatatacatggctaatattagggtagtcctacattgttaaaca |
228 |
Q |
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|||||||||||| | |||||||||||||||| || |||| |||||||||||||| |
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| T |
148 |
tgagtttacacacacatacatggctaatatttggctagttttacattgttaaaca |
94 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1333; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 250 - 201
Alignment:
| Q |
52 |
agaagggtttcaaacgtattaaaccgcaaaagcgcgtcatcttttatatg |
101 |
Q |
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|||| |||||| ||||||||||||| ||||||| ||||||||||||||| |
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| T |
250 |
agaatggtttcgaacgtattaaaccccaaaagcatgtcatcttttatatg |
201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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