View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_21 (Length: 436)
Name: NF20706_low_21
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 39784279 - 39784700
Alignment:
| Q |
1 |
acaatgcaattttgtatagttttttagattctaggcattgacattgcatcatgccaaaccagattcatcatgcatgaaacaaaacaaaactatcacacaa |
100 |
Q |
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| T |
39784279 |
acaatgcaattttgtatagttttttagattctaggcattgacattgcatcatgccaaaccatattcatcatgcatgaaacaaaacaaaactatcacacaa |
39784378 |
T |
|
| Q |
101 |
atgacatgatataactgtgaaaaatttaaagcaaaacatgtaacaaaagtcaagttagaaaataagaaagcacataacataattccatagcataaggtag |
200 |
Q |
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| T |
39784379 |
atgacatgatataactgtgaaaaatttaaagcaaaacatgaaacaaaagtcaagttagaaaataagaaagcacataacataattccatagcataaggtag |
39784478 |
T |
|
| Q |
201 |
aagaaagaaatgaaatataggttctaaccttgtaagaattgaagtatatatcacaattttctgctgaacaagaaaacaacagaacaagaagatctctgaa |
300 |
Q |
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| T |
39784479 |
aagaaagaaatgaaatataggttctaaccttgtaagaattgaagtatatatcacaattttctgcagaacaagaaaacaacagaacaagaagatctctgaa |
39784578 |
T |
|
| Q |
301 |
gaaaaagcaagaaactcttccttaatcttttcnnnnnnncttgagggacaacctttttaaaatttgatgaaaactctgctaatatgctctcacattcccc |
400 |
Q |
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| T |
39784579 |
gaaaaagcaagaaactcttccttaatcttttcaaaaaaacttgagggacaacctttttaaaatttgatgaaaactctgctaatatgctctcacattcccc |
39784678 |
T |
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| Q |
401 |
atcaagctctggctattatata |
422 |
Q |
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| T |
39784679 |
atcaagctctggctattatata |
39784700 |
T |
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