View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20706_low_23 (Length: 421)

Name: NF20706_low_23
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20706_low_23
NF20706_low_23
[»] chr2 (20 HSPs)
chr2 (12-409)||(11145078-11145475)
chr2 (32-298)||(11149122-11149389)
chr2 (66-243)||(11136945-11137122)
chr2 (43-242)||(11104099-11104298)
chr2 (77-243)||(11110093-11110259)
chr2 (65-242)||(11155562-11155739)
chr2 (62-240)||(11171172-11171350)
chr2 (78-241)||(11118099-11118262)
chr2 (77-242)||(11095640-11095805)
chr2 (65-243)||(10794016-10794194)
chr2 (128-240)||(11191955-11192067)
chr2 (321-398)||(11148369-11148446)
chr2 (39-159)||(11177259-11177379)
chr2 (322-402)||(11192278-11192358)
chr2 (327-387)||(11198285-11198345)
chr2 (322-404)||(11170988-11171070)
chr2 (320-398)||(11117878-11117956)
chr2 (332-401)||(11135769-11135838)
chr2 (139-235)||(11200121-11200217)
chr2 (333-398)||(11154832-11154897)


Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 12 - 409
Target Start/End: Complemental strand, 11145475 - 11145078
Alignment:
Q  12 aatactatataataaaggacgaggcatatatataccagtgtagatgataattcagcagcaagagcaagaatatcagcacaagaaactgtgttagggcaag 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11145475 aatactatataataaaggatgaggcatatatataccagtgtagatgataattcagcagcaagagcaagaatatcagcacaagaaactgtgttagggcaag 11145376  T
Q  112 ccttttctactgctgttttgatttgattcacaacatccaaacctcttaatgagtttctgtttggaaaagcatcttgttcactcacaatagtagcagtgtt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11145375 ccttttctactgctgttttgatttgattcacaacatccaaacctctcaatgagtttctgtttggaaaagcatcttgttcactgacaatagtagcagtgtt 11145276  T
Q  212 attcaacaaaactgatgcatcacaaccctgttcaagtcatagatcacattatttacattatgattataacattagcataatacaaatcatttgcaagtag 311  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11145275 attcaacaaaactgatgcatcacaaccctgttcaagtcatagattacattatttacattatgattataacattagcataatacaaatcatttacaagtag 11145176  T
Q  312 aaggtaaagtatacatacttgaacaaaacagtcatggaagtgaagcctaacaagacttgcaagcatacgagtatctgtcttagaaacgtttctgatga 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11145175 aaggtaaagtatacatacttgaacaaaacagtcatggaagtgaagcctaacaagacttgcaagcatacgagtatctgtcttagaaacgtttcttatga 11145078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 32 - 298
Target Start/End: Complemental strand, 11149389 - 11149122
Alignment:
Q  32 gaggcatatatataccagtgtagatgataattcagcagcaagagcaagaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttg 131  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||    
T  11149389 gaggcatatatataccagtgtagatgataattcagcagaaagggcaagaatatcagcgcaagaaactgtgttaggacaagccttttccacagctgttttg 11149290  T
Q  132 atttgattcacaacatccaaacctcttaatgagtttctgtttggaaaagcatcttgttcactcacaatagtagcagtgttattcaacaaaactgatgcat 231  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||| || ||||  |||||||||||||    
T  11149289 atttgattcacaacatctaaacctcttaatgagtttctgtttggaaaagcatcttgttcactcacaacggtatcagttttgttcagtaaaactgatgcat 11149190  T
Q  232 cacaaccctgttcaagt-catagatcacattatttacattatgattataacattagcataatacaaat 298  Q
    ||||||||||||  |||  ||||||||||| ||||||||||||||||||||| |||||||||| ||||    
T  11149189 cacaaccctgttacagtatatagatcacataatttacattatgattataacaatagcataataaaaat 11149122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 66 - 243
Target Start/End: Complemental strand, 11137122 - 11136945
Alignment:
Q  66 gcagcaagagcaagaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttgatttgattcacaacatccaaacctcttaatgagt 165  Q
    |||| ||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||  ||||    
T  11137122 gcagaaagggcaagaatatcagcacaagaaactgtgttaggacaagccttttccactgctgttttgatttgattcacaacatccaaacctcgtagagagt 11137023  T
Q  166 ttctgtttggaaaagcatcttgttcactcacaatagtagcagtgttattcaacaaaactgatgcatcacaaccctgtt 243  Q
    |  | ||||| ||||| ||||||||||||||||| ||| |||| || ||||| |||||||||||||||||||||||||    
T  11137022 tgatatttgggaaagcttcttgttcactcacaatggtatcagttttgttcaataaaactgatgcatcacaaccctgtt 11136945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 11104298 - 11104099
Alignment:
Q  43 ataccagtgtagatgataattcagcagcaagagcaagaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttgatttgattcac 142  Q
    |||||||  |||| |||| |||||| |||| || ||||||||||||||||||||| |||||||| ||  | | ||| |||||||| ||||||| ||||||    
T  11104298 ataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgattttattcac 11104199  T
Q  143 aacatccaaacctcttaatgagtttctgtttggaaaagcatcttgttcactcacaatagtagcagtgttattcaacaaaactgatgcatcacaaccctgt 242  Q
    |||||||||||   |||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||| ||||||    
T  11104198 aacatccaaacgctttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctgt 11104099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 77 - 243
Target Start/End: Complemental strand, 11110259 - 11110093
Alignment:
Q  77 aagaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttgatttgattcacaacatccaaacctcttaatgagtttctgtttgga 176  Q
    |||||||||||||||||||||| | ||||||||||| ||||| |||   || ||||||||||| | ||||||||| |||||||| |||||  | ||||||    
T  11110259 aagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgataacatccaatcctcttaaggagttgatatttgga 11110160  T
Q  177 aaagcatcttgttcactcacaatagtagcagtgttattcaacaaaactgatgcatcacaaccctgtt 243  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  11110159 aaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaaccctgtt 11110093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 65 - 242
Target Start/End: Complemental strand, 11155739 - 11155562
Alignment:
Q  65 agcagcaagagcaagaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttgatttgattcacaacatccaaacctcttaatgag 164  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||  ||||||  || |||||||| ||||| |||||||||||||||||||| |||    
T  11155739 agcagcaagagcaagaatatcagcacaagaaactgtgttaggacaagcactttctatagcagttttgatctgatttacaacatccaaacctcttaaagag 11155640  T
Q  165 tttctgtttggaaaagcatcttgttcactcacaatagtagcagtgttattcaacaaaactgatgcatcacaaccctgt 242  Q
    ||  | ||||||||||| | |||||| || || || |||||||| || ||||||||||| || |||||||| ||||||    
T  11155639 ttgttatttggaaaagcttgttgttcgcttacgatcgtagcagtattgttcaacaaaaccgaggcatcacatccctgt 11155562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 62 - 240
Target Start/End: Complemental strand, 11171350 - 11171172
Alignment:
Q  62 ttcagcagcaagagcaagaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttgatttgattcacaacatccaaacctcttaat 161  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||| |    
T  11171350 ttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgattcacaacatctaaacctcttatt 11171251  T
Q  162 gagtttctgtttggaaaagcatcttgttcactcacaatagtagcagtgttattcaacaaaactgatgcatcacaaccct 240  Q
    |||||  | |||  ||||||   ||| |||||    || |||| |||| |||||||||| | |||||||||||||||||    
T  11171250 gagttgttatttccaaaagctgtttgctcacttgtgatcgtagaagtggtattcaacaagattgatgcatcacaaccct 11171172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 11118262 - 11118099
Alignment:
Q  78 agaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttgatttgattcacaacatccaaacctcttaatgagtttctgtttggaa 177  Q
    ||||||||||||||||||||| | ||||| ||| | ||||| ||  | ||||| || ||||| | ||||||||| | |||||| |||||| | ||||||     
T  11118262 agaatatcagcacaagaaactttattaggacaaactttttccacctcagttttaatctgattgataacatccaatcttcttaaggagtttatatttggac 11118163  T
Q  178 aagcatcttgttcactcacaatagtagcagtgttattcaacaaaactgatgcatcacaaccctg 241  Q
     |||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||    
T  11118162 cagcatcttgttcactcgcaatagtagaagttttattcaacaaaactgatgcatcacaaccctg 11118099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 242
Target Start/End: Complemental strand, 11095805 - 11095640
Alignment:
Q  77 aagaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttgatttgattcacaacatccaaacctcttaatgagtttctgtttgga 176  Q
    ||||||||||||||||||||| |||   || ||  | ||||| |||||||| |||||||| || |||||||||||||| |||||||||||| ||||||||    
T  11095805 aagaatatcagcacaagaaacagtggctggacattcattttcaactgctgtcttgatttggtttacaacatccaaaccccttaatgagtttatgtttgga 11095706  T
Q  177 aaagcatcttgttcactcacaatagtagcagtgttattcaacaaaactgatgcatcacaaccctgt 242  Q
    |  |||||||| ||||| || || |||  |||||| ||||||||||||||| ||||||||||||||    
T  11095705 agtgcatcttgctcacttactatggtattagtgttgttcaacaaaactgatccatcacaaccctgt 11095640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 65 - 243
Target Start/End: Original strand, 10794016 - 10794194
Alignment:
Q  65 agcagcaagagcaagaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttgatttgattcacaacatccaaacctcttaatgag 164  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||  |||| |||||  |||||||||| | |||||||||||  |||    
T  10794016 agcagcaagtgcaagaatatcagcacaagaaactgtattagggcaagctttttccacgtctgtcttgatacgattcacaacttgcaaacctcttatggag 10794115  T
Q  165 tttctgtttggaaaagcatcttgttcactcacaatagtagcagtgttattcaacaaaactgatgcatcacaaccctgtt 243  Q
    ||  | ||||| | ||| | | |||| ||||| |||||||||||||| |||| |||||  |||||||| ||||||||||    
T  10794116 ttgatatttgggagagcttgtagttcgctcacgatagtagcagtgttgttcagcaaaatggatgcatcgcaaccctgtt 10794194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 11191955 - 11192067
Alignment:
Q  128 tttgatttgattcacaacatccaaacctcttaatgagtttctgtttggaaaagcatcttgttcactcacaatagtagcagtgttattcaacaaaactgat 227  Q
    ||||||||||||||||| |||||||||||||| ||||||||| ||||| |||||  |||| |||||||| |||||| ||| || ||||||||| | ||||    
T  11191955 tttgatttgattcacaatatccaaacctcttattgagtttctatttggcaaagctccttgctcactcacgatagtatcagagtcattcaacaagagtgat 11192054  T
Q  228 gcatcacaaccct 240  Q
    |||||||||||||    
T  11192055 gcatcacaaccct 11192067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 321 - 398
Target Start/End: Complemental strand, 11148446 - 11148369
Alignment:
Q  321 tatacatacttgaacaaaacagtcatggaagtgaagcctaacaagacttgcaagcatacgagtatctgtcttagaaac 398  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||  |||||||||||| |||| ||||||||||    
T  11148446 tatacatacttgaacaaaacagtcatgaaagtgaagcctgacaagactaccaagcatacgaggatctttcttagaaac 11148369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 11177379 - 11177259
Alignment:
Q  39 atatataccagtgtagatgataattcagcagcaagagcaagaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttgatttgat 138  Q
    |||||||||||   ||| |||| |||||||| ||| ||||||||||||||||||||||| |||||||| ||||| ||||| || ||||||||||| || |    
T  11177379 atatataccagatcagaagatatttcagcagaaagggcaagaatatcagcacaagaaacagtgttaggacaagcattttccaccgctgttttgatctggt 11177280  T
Q  139 tcacaacatccaaacctctta 159  Q
    | |  || |||||||||||||    
T  11177279 ttatcacgtccaaacctctta 11177259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 402
Target Start/End: Original strand, 11192278 - 11192358
Alignment:
Q  322 atacatacttgaacaaaacagtcatggaagtgaagcctaacaagacttgcaagcatacgagtatctgtcttagaaacgttt 402  Q
    |||||||||||||||||||| ||||| || ||||||||||  | ||| ||||| ||||||| |||||||| ||||||||||    
T  11192278 atacatacttgaacaaaacaatcatgaaaatgaagcctaatgaaactggcaaggatacgaggatctgtctgagaaacgttt 11192358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 387
Target Start/End: Complemental strand, 11198345 - 11198285
Alignment:
Q  327 tacttgaacaaaacagtcatggaagtgaagcctaacaagacttgcaagcatacgagtatct 387  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||  ||||||||||||    
T  11198345 tacttgaacaaaacaatcatgaaagtgaagcctaacaagactagcaaaaatacgagtatct 11198285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 404
Target Start/End: Complemental strand, 11171070 - 11170988
Alignment:
Q  322 atacatacttgaacaaaacagtcatggaagtgaagcctaacaagacttgcaagcatacgagtatctgtcttagaaacgtttct 404  Q
    |||| |||||||||||| || ||||||||||||||||| |  | ||| ||||| ||||||| ||||||||||||||| |||||    
T  11171070 atacttacttgaacaaagcaatcatggaagtgaagccttatcaaactagcaagtatacgaggatctgtcttagaaacatttct 11170988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 398
Target Start/End: Complemental strand, 11117956 - 11117878
Alignment:
Q  320 gtatacatacttgaacaaaacagtcatggaagtgaagcctaacaagacttgcaagcatacgagtatctgtcttagaaac 398  Q
    |||||||||||||||| ||||| ||||| |||||||||||||  | ||| ||| |||| |||| ||| |||||||||||    
T  11117956 gtatacatacttgaacgaaacaatcatgaaagtgaagcctaatgatactcgcaggcattcgagaatcagtcttagaaac 11117878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 401
Target Start/End: Complemental strand, 11135838 - 11135769
Alignment:
Q  332 gaacaaaacagtcatggaagtgaagcctaacaagacttgcaagcatacgagtatctgtcttagaaacgtt 401  Q
    |||||||||||||||| |||||||| || || ||||| |||||||| |||| ||| |||||||| |||||    
T  11135838 gaacaaaacagtcatgaaagtgaagtctgacgagactagcaagcatgcgaggatcagtcttagagacgtt 11135769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 11200217 - 11200121
Alignment:
Q  139 tcacaacatccaaacctcttaatgagtttctgtttggaaaagcatcttgttcactcacaatagtagcagtgttattcaacaaaactgatgcatcaca 235  Q
    |||||||||||||||||||||  |||||  | ||||||||||| | |||||| || || || || || ||||| |||| |||||| |||||||||||    
T  11200217 tcacaacatccaaacctcttatggagttgatatttggaaaagcttgttgttcgcttacgattgttgctgtgttgttcagcaaaaccgatgcatcaca 11200121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 398
Target Start/End: Complemental strand, 11154897 - 11154832
Alignment:
Q  333 aacaaaacagtcatggaagtgaagcctaacaagacttgcaagcatacgagtatctgtcttagaaac 398  Q
    ||||||||||||||| ||||||||||| || || || |||||||| ||   |||||||||||||||    
T  11154897 aacaaaacagtcatgaaagtgaagcctgacgaggctagcaagcatgcgttgatctgtcttagaaac 11154832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University