View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_28 (Length: 389)
Name: NF20706_low_28
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 5467202 - 5466828
Alignment:
| Q |
1 |
gcaacttaccaaaatgaatccttcttttcttgtgttaataattcttcaatagaaatgtcagaaaattcctcatcttttctctctcccatcttacaggatt |
100 |
Q |
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| T |
5467202 |
gcaacttaccaaaatgaatccttcttttcttgtgttaataattcttcaaaagaaatgtcagaaaattcctcatcttttctctctcccatcttacaggatt |
5467103 |
T |
|
| Q |
101 |
tttccttctccatggaaactccaatttcaagcatctttatagacaaaggaatgtgtaattagtacataataacaaaataatatgtcagttacaacctgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5467102 |
tttccttctccatggaaactccaatttcaagcatctttatagacaaaggaatgtgtaattagtacataataacaaaataatatgtcagttacaacctgca |
5467003 |
T |
|
| Q |
201 |
tacacaaaatattgttaggatacacaaaatatacaaaatcgataaggaacataaacgaagtagcatacac--aatattgttaggataagagcaaaaaatt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
5467002 |
tacacaaaatattgttaggatacacaaaatatacaaaatcgataaggaacataaacgaagtagcatacacaaaatattgttaggataagagcaaaatatt |
5466903 |
T |
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| Q |
299 |
acaactaataagccccataagcccgaaaatgtcacattgatgatatgtagagcttgtggtaaattaccttgttat |
373 |
Q |
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| T |
5466902 |
acaactaataagccccataagccagaaaatgtcacattgatgatatgtagagcttgtggtaaattaccctgttat |
5466828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 42980219 - 42980291
Alignment:
| Q |
3 |
aacttaccaaaatgaatccttcttttcttgtgttaataattcttcaatagaaatgtcagaaaattcctcatct |
75 |
Q |
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|||| ||||||| ||||||||||| ||||||| |||||||||||||| ||||||||| | |||||| |||||| |
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| T |
42980219 |
aactaaccaaaacgaatccttcttctcttgtgctaataattcttcaaaagaaatgtcggcaaattcatcatct |
42980291 |
T |
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