View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_29 (Length: 375)
Name: NF20706_low_29
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 30 - 356
Target Start/End: Original strand, 51118652 - 51118990
Alignment:
| Q |
30 |
agattctacatttgatatctgctactccaatcattttaccaactcatcttaaagcattcaattctgttttttgttattgttttggtgaatgctgt----- |
124 |
Q |
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| T |
51118652 |
agattctacatttgatatctgctactccaatcattttaccaactcatcttaaagcattcaattctgttttttgttattgttttgatgaatgctgtgctgt |
51118751 |
T |
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| Q |
125 |
tgtatgataagtgccaatgtttggaccgttgcttattgtgtgttgaatgtttgaaattttgtattatgaataccatggaaagcttgaatttgctttatt- |
223 |
Q |
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| T |
51118752 |
tgtatgctaagtgccaatgtttggactgttgcttattgtgtgttgaatgtttgaaattttgtattatgaataccatggaaagcttgaatttgctttatta |
51118851 |
T |
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| Q |
224 |
---ggatgcagttgcatttttcccaataactgttcaagggggaaacatagttccaaaaaggcccaaacttggattcttaacatgaattctaatctagact |
320 |
Q |
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| T |
51118852 |
attggatgcagttgcatttttcccaataactgttcaagggggaaacatagttccaaaaaggcccagacttggattcttaacatgaattctaatctagact |
51118951 |
T |
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| Q |
321 |
cttgatgtgatc---cgactccctctcaaagatattgaa |
356 |
Q |
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| T |
51118952 |
cttgatgtgatccgacgactccctctcaaagacattgaa |
51118990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 51111737 - 51111804
Alignment:
| Q |
34 |
tctacatttgatatctgctactccaatcattttaccaactcatcttaaagcattcaattctgtttttt |
101 |
Q |
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| T |
51111737 |
tctacatttgatatttgctactccagtcatttccccaactcattttaaagcattcaattctgtttttt |
51111804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 51118622 - 51118590
Alignment:
| Q |
1 |
ctaaaattattgactatgcttttgtaaatagat |
33 |
Q |
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| T |
51118622 |
ctaaaattattgactatgcttttgtaaatagat |
51118590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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