View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_3 (Length: 765)
Name: NF20706_low_3
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 165 - 723
Target Start/End: Complemental strand, 5717660 - 5717106
Alignment:
| Q |
165 |
tgatttttgtttgaagaacatggtaataatgatattgtggatgcacgtgtttgctgccaaaatagctatgaagcacgaatggggtatgctttgctggaaa |
264 |
Q |
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| T |
5717660 |
tgatttttgtatgaagaacatggtaataatgatattgtggatgcacgtgtttgctgccaaaatagctatgaagcacgaatggggtatgctttgctggaaa |
5717561 |
T |
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| Q |
265 |
gaaggtaaggtttaaaacaaatgacaactagaagcaataaaagcattgttgttgcagtgacaactttgtaaatatgggacacaaatgtaaacagcaaagc |
364 |
Q |
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| T |
5717560 |
gaaggtaaggtttaacacaaatgacaactagaatcaataaaagcattgttgttgcagtgacaactttgtaaatatgggacacaaatgtaaacagcaaagc |
5717461 |
T |
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| Q |
365 |
aatagcaagttttaggctgtataagtgacataaaaacatgagggtacacatgacctaaaaggaatcaatgaaatcataaattaaatggtcacacacattc |
464 |
Q |
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| T |
5717460 |
aatagcaagttttaggctgtataagtgacataaaaacatgagggtacacatgacctaaaaggaatcaatgaaatcataaattaaatggtcacacacattc |
5717361 |
T |
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| Q |
465 |
atataaaaacaatagaaggtgagtctcttttcnnnnnnnnatattttgtgtaaaatacaaagatagaaaagagtgtttctcttttgtccacgttttacca |
564 |
Q |
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| T |
5717360 |
atataaaaacaatagaaagtgagtccctttt------tttatattttgtgtaaaatacaaagatagaaaagagtgtttctcttttgtccacgttttacca |
5717267 |
T |
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| Q |
565 |
gagaactagctttggtttttgttgtcattattaactgaatcatgacaagacaagtcatcataagcagtacaaatatatagaacatgtaaccctgttttat |
664 |
Q |
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| T |
5717266 |
gagaactagctttggtttttgttgtcattattaactgaatcatgacaagacaagtcatcataagcagtacaaatatatagaacaagtaaccctgttttat |
5717167 |
T |
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| Q |
665 |
ttgtaaataatctactatgttccaacctataagatatgtatta--cacacttcaaattaag |
723 |
Q |
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| T |
5717166 |
ttgtaaataatctaccatgttccaacctataagatatatattattgacacttcaaattaag |
5717106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 5717806 - 5717715
Alignment:
| Q |
3 |
ttgtttttccacttcgcattcacgttacattcaattaaaatcaacttttattaccgcagaaccaaatatacactaaatatactagttgacat |
94 |
Q |
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| T |
5717806 |
ttgtttttccacttcgcattcacgttacgttcaattaaaatgaacttttattaccgcagaaccaaatatacactaaatatactagttgacat |
5717715 |
T |
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