View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_31 (Length: 364)
Name: NF20706_low_31
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 341
Target Start/End: Original strand, 2931190 - 2931519
Alignment:
| Q |
12 |
acagaggatttgaagaaacaattgatagaaagttaatagtttctttgcataacaggttcataatgaacacaaattctaagaaaaaattatttccctccat |
111 |
Q |
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| T |
2931190 |
acagaggatttgaagaaacaattgatagaaagttaatagtttctttgcataacaagttcataatgaacacaaattctaagaaaaatttatttccctccat |
2931289 |
T |
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| Q |
112 |
tggctacaattattattgttacttaaaacaaaacaagattactactattattcaaagtgaataagtaacaagaaaatcaaagccatgagtagaggaatgt |
211 |
Q |
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| T |
2931290 |
tggctacaattattattgttactttaaacaaaacaagattactactattattcaaagtgaataagtaacaagaaaatcaaagccatgagtagaggaatgt |
2931389 |
T |
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| Q |
212 |
gagtttggaattttgattatgattgatacatgnnnnnnntgtagaagaggatatagagagagagtgaaaatgtggggtttataagactttttagcgtgag |
311 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2931390 |
gagtttggaattttgattatgattgatacatgaaaaaaatgtagaagaggatatagagagagagtgaaaatgtggggtttataagactttttagcgtgag |
2931489 |
T |
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| Q |
312 |
gaaaaggcatggaataataggagaggaata |
341 |
Q |
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| T |
2931490 |
gaaaaggcatggaataataggagaggaata |
2931519 |
T |
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