View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20706_low_35 (Length: 344)
Name: NF20706_low_35
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20706_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 37848934 - 37849241
Alignment:
| Q |
20 |
ggaaatctttatcatttgcagaaccttttgttgtttggtaatgctttctccggaaaagtaccttcagagttaagtaactgtagtttgcttcagaatttag |
119 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37848934 |
ggaaatctttatcatttacagaaccttttgttgtttggtaatgctttctccggaaaagtaccttcagagttaagtaactgtagtttgcttcagaatttag |
37849033 |
T |
|
| Q |
120 |
acctttctgagaacagattcagtggaaagataccatatactttgaaaaagttgcagaagttacagtttatggcattggcttccaatatgttgactggtga |
219 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37849034 |
agctttctgagaacagattcagtggaaagataccatatactttgaaaaatttgcagaagttacagtttatggcattggcttccaatatgttgactggtga |
37849133 |
T |
|
| Q |
220 |
aattccagattctttgtttcaaattcaatcccttgaagaagttagcctgcacagtaacctacttagtggtcctatcccaacaaatattggaaacttgact |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37849134 |
aattccagattctttgtttcaaattcaatcccttgaagaagttagcctgcacagtaacctacttagtggtcctatcccaacaaatattggaaacttgact |
37849233 |
T |
|
| Q |
320 |
cgtctatt |
327 |
Q |
| |
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|||||||| |
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| T |
37849234 |
cgtctatt |
37849241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 37841175 - 37841485
Alignment:
| Q |
17 |
attggaaatctttatcatttgcagaaccttttgttgtttggtaatgctttctccggaaaagtaccttcagagttaagtaactgtagtttgcttcagaatt |
116 |
Q |
| |
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|||||||| ||||||| |||||||||||| | ||||| ||||||| |||| | ||||| || |||||||||||||| || |||||||||||| || ||| |
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| T |
37841175 |
attggaaacttttatcacttgcagaaccttgtattgttgggtaatggtttcacaggaaatgtcccttcagagttaagcaattgtagtttgcttgagtatt |
37841274 |
T |
|
| Q |
117 |
tagacctttctgagaacagattcagtggaaagataccatatactttgaaaaagttgcagaagttacagtttatggcattggcttccaatatgttgactgg |
216 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||| || ||| || |||| | | || |||||||| || ||||||| |
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| T |
37841275 |
tagacctttctaagaatagattcagtggaaagataccatatagtttgaaaaagttgcaaaatttaaaggttataggactgtcttccaatctgctgactgg |
37841374 |
T |
|
| Q |
217 |
tgaaattccagattctttgtttcaaattcaatcccttgaagaagttagcctgcacagtaacctacttagtggtcctatcccaacaaatattggaaacttg |
316 |
Q |
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||||||||||||||| |||||| ||||||| ||||| |||||||| ||||| ||||||||||| || ||||| ||||||||||||||||||||||||||| |
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| T |
37841375 |
tgaaattccagattcattgtttgaaattcattccctcgaagaagtgagcctacacagtaaccttctcagtggccctatcccaacaaatattggaaacttg |
37841474 |
T |
|
| Q |
317 |
actcgtctatt |
327 |
Q |
| |
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|||| |||||| |
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| T |
37841475 |
actcatctatt |
37841485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 37829852 - 37830154
Alignment:
| Q |
17 |
attggaaatctttatcatttgcagaaccttttgttgtttggtaatgctttctccggaaaagtaccttcagagttaagtaactgtagtttgcttcagaatt |
116 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||| |||||||| ||||||||||||| |
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| T |
37829852 |
attggtaacctttatcacttgcagaaccttttgttgttcggtaatggtttctcaggaaacgtgccttcagagttaagcaactgtagcttgcttcagaatt |
37829951 |
T |
|
| Q |
117 |
tagacctttctgagaacagattcagtggaaagataccatatactttgaaaaagttgcagaagttacagtttatggcattggcttccaatatgttgactgg |
216 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||| |||||| ||||| ||||||||| || ||| ||||| | |||| |||||||| | ||||||| |
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| T |
37829952 |
tagatctttctgagaacagattcagtggaagtatatcatatagtttgataaagttgcaaaatttaaagtttttaagattgtcttccaatcttctgactgg |
37830051 |
T |
|
| Q |
217 |
tgaaattccagattctttgtttcaaattcaatcccttgaagaagttagcctgcacagtaacctacttagtggtcctatcccaacaaatattggaaacttg |
316 |
Q |
| |
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| |||||||||||||||| ||| |||||||||||||||||||||| |||||||||| |||||| ||||| || ||||||||| |||||||||||| || |
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| T |
37830052 |
taaaattccagattctttatttgaaattcaatcccttgaagaagtgagcctgcacaataaccttcttagcggcaatatcccaaccaatattggaaacatg |
37830151 |
T |
|
| Q |
317 |
act |
319 |
Q |
| |
|
||| |
|
|
| T |
37830152 |
act |
37830154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 30 - 327
Target Start/End: Original strand, 37835569 - 37835866
Alignment:
| Q |
30 |
atcatttgcagaaccttttgttgtttggtaatgctttctccggaaaagtaccttcagagttaagtaactgtagtttgcttcagaatttagacctttctga |
129 |
Q |
| |
|
|||| ||||||| |||| | |||||||| |||| |||||| |||||||| |||||||||||||| ||||||||||||||| || |||||||||||||||| |
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| T |
37835569 |
atcacttgcagacccttgtattgtttggaaatggtttctcaggaaaagtgccttcagagttaagcaactgtagtttgcttgagtatttagacctttctga |
37835668 |
T |
|
| Q |
130 |
gaacagattcagtggaaagataccatatactttgaaaaagttgcagaagttacagtttatggcattggcttccaatatgttgactggtgaaattccagat |
229 |
Q |
| |
|
||| |||||||||||||||||||||| || |||||| ||||| || |||| ||||||| | | |||||| || | | ||||||||||||||| |
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| T |
37835669 |
gaatagattcagtggaaagataccatctagtttgaataagttacaacttttacggtttatgagtctctcatccaatctgcttatcggtgaaattccagat |
37835768 |
T |
|
| Q |
230 |
tctttgtttcaaattcaatcccttgaagaagttagcctgcacagtaacctacttagtggtcctatcccaacaaatattggaaacttgactcgtctatt |
327 |
Q |
| |
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|| |||||| |||||| |||| | |||||||| | ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| |||||| |
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| T |
37835769 |
tccttgtttaaaattccatccttggaagaagtaaacctgcacagtaaccttcttagtggtcctatcccgaccaatattggaaacttgactcatctatt |
37835866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 36864317 - 36864627
Alignment:
| Q |
17 |
attggaaatctttatcatttgcagaaccttttgttgtttggtaatgctttctccggaaaagtaccttcagagttaagtaactgtagtttgcttcagaatt |
116 |
Q |
| |
|
|||||||| |||||||||||| |||| |||||||||||||||||| |||||| ||||| || |||||||||||||| |||||||||||||| |||| | |
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| T |
36864317 |
attggaaacctttatcatttggagaatcttttgttgtttggtaataatttctcaggaaaggtgccttcagagttaagcaactgtagtttgctagagaagt |
36864416 |
T |
|
| Q |
117 |
tagacctttctgagaacagattcagtggaaagataccatatactttgaaaaagttgcagaagttacagtttatggcattggcttccaatatgttgactgg |
216 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||||||| ||| |||||||| | | || ||| ||| |||| |||| |||||||| |||||||||| |
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|
| T |
36864417 |
tagacctttctgagaatagatttaatggaaagataccgcatagtttgaaaaggctaagaaatttaaagtctatgagattgtcttccaatttgttgactgg |
36864516 |
T |
|
| Q |
217 |
tgaaattccagattctttgtttcaaattcaatcccttgaagaagttagcctgcacagtaacctacttagtggtcctatcccaacaaatattggaaacttg |
316 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||||||||| |||||||||| |||||| |||||||| ||| ||||| ||||||||||||||| |
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|
| T |
36864517 |
tgaaattccagattctttatttgaaattccttcccttgaagaagtgagcctgcacaataaccttcttagtggaaatattccaaccaatattggaaacttg |
36864616 |
T |
|
| Q |
317 |
actcgtctatt |
327 |
Q |
| |
|
|||| |||||| |
|
|
| T |
36864617 |
actcatctatt |
36864627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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