View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20706_low_4 (Length: 718)

Name: NF20706_low_4
Description: NF20706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20706_low_4
NF20706_low_4
[»] chr3 (2 HSPs)
chr3 (66-202)||(52671106-52671241)
chr3 (592-678)||(34020970-34021056)
[»] chr2 (2 HSPs)
chr2 (319-493)||(14360724-14360902)
chr2 (568-682)||(14360542-14360654)
[»] chr5 (2 HSPs)
chr5 (265-322)||(17591229-17591286)
chr5 (233-270)||(36912920-36912957)
[»] chr4 (1 HSPs)
chr4 (265-322)||(19130239-19130296)
[»] chr7 (2 HSPs)
chr7 (265-322)||(14735503-14735560)
chr7 (233-270)||(14735440-14735477)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 66 - 202
Target Start/End: Original strand, 52671106 - 52671241
Alignment:
Q  66 gtacttcaatcttcttt--atagttttgcttcagttttacttggaagaagagatatcatatgtaaaacaaaattaaaaaagtagagaagattatactagt 163  Q
    |||||||||||||||||  | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  52671106 gtacttcaatcttcttttaagagttttgcatcagttttacttggaagaagagatatcatatgtaaaacaaaattaaaaaagtagagaagatta---tagt 52671202  T
Q  164 tgacaacattatgtaaagcataataatggtaataatatg 202  Q
    || ||||||||||||||||||||||||||||||||||||    
T  52671203 tggcaacattatgtaaagcataataatggtaataatatg 52671241  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 678
Target Start/End: Complemental strand, 34021056 - 34020970
Alignment:
Q  592 gctaaagcaagtttcatcattttcttttacaatgacaaaacccaaaactcaaagaaa--ttaccgtacattaccaaacatgtgccaaaa 678  Q
    |||||||||||||||||| |||||||||| | ||| ||||  ||||||||||| |||  |||||  | |||||||| ||||||||||||    
T  34021056 gctaaagcaagtttcatctttttcttttagagtgagaaaattcaaaactcaaaaaaagcttacc--atattaccaagcatgtgccaaaa 34020970  T

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Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 319 - 493
Target Start/End: Complemental strand, 14360902 - 14360724
Alignment:
Q  319 atcaactttgtctctctcattgcaagcaccctctttcagacttcaaatcctttctctttcaatgggtttgaaa----gcttaatattaataatcacaggg 414  Q
    ||||||||| |||||||  |||||||  ||||||||||||||||| ||| |||||||||||||||||||||||    |||||||| ||||||||| || |    
T  14360902 atcaactttatctctcttgttgcaaggtccctctttcagacttcatatcttttctctttcaatgggtttgaaattaagcttaatactaataatcagagag 14360803  T
Q  415 ctttgaagtaagaacataaagagttttcattcacaatcccaactcccaaagaaaccaaagccaaaagtatatcatattc 493  Q
     ||||||||||||||||||| ||| |  |||||||||| ||||||||||| ||||||||||||||| |||| |||||||    
T  14360802 ttttgaagtaagaacataaaaagtctctattcacaatctcaactcccaaataaaccaaagccaaaattataccatattc 14360724  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 568 - 682
Target Start/End: Complemental strand, 14360654 - 14360542
Alignment:
Q  568 tatcatagaaacatgatttccatagctaaagcaagtttcatcattttcttttacaatgacaaaacccaaaactcaaagaaattaccgtacattaccaaac 667  Q
    ||||||||||||| ||||||||| ||| |||||||||||||  |||| ||||||||||| |||| |||||||||||||||| |  |   |||||||||||    
T  14360654 tatcatagaaacacgatttccatggctgaagcaagtttcatagtttttttttacaatgagaaaatccaaaactcaaagaaact--ctgccattaccaaac 14360557  T
Q  668 atgtgccaaaaagat 682  Q
    |||||||||||||||    
T  14360556 atgtgccaaaaagat 14360542  T

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Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 17591286 - 17591229
Alignment:
Q  265 tcttccacccactatcacctttctctctcctccatgccatccaccaccagcaacatca 322  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||    
T  17591286 tcttccacccactatcacccttctctctcatccatgccacccaccaccagcaacatca 17591229  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 36912957 - 36912920
Alignment:
Q  233 tcttatgatagtctcttcacatttgaattttttcttcc 270  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  36912957 tcttatgatagtctcttcacacttgatttttttcttcc 36912920  T

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Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 19130296 - 19130239
Alignment:
Q  265 tcttccacccactatcacctttctctctcctccatgccatccaccaccagcaacatca 322  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  19130296 tcttccacccactatcacccttctctctcctccatgccacccaccacctgcaacatca 19130239  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 14735503 - 14735560
Alignment:
Q  265 tcttccacccactatcacctttctctctcctccatgccatccaccaccagcaacatca 322  Q
    ||||||||||||||||| | ||||||||| ||||||||| |||| |||||||||||||    
T  14735503 tcttccacccactatcatccttctctctcatccatgccacccactaccagcaacatca 14735560  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 14735440 - 14735477
Alignment:
Q  233 tcttatgatagtctcttcacatttgaattttttcttcc 270  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  14735440 tcttatgatagtctcttcacacttgatttttttcttcc 14735477  T

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